View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8768_high_7 (Length: 201)
Name: NF8768_high_7
Description: NF8768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8768_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 41755971 - 41755823
Alignment:
| Q |
26 |
ttagatatgtatcaatgtaactatgaactaattagtaagaacactatttgcatcattagtacccatgagttgatagacatggttatttgatgtgttagac |
125 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41755971 |
ttagatatgtatcaatgtaattatgaactaattagtaagaaccctatttgtatcattagtaccaatgagttgatagacatggttatttgatgtgttagac |
41755872 |
T |
|
| Q |
126 |
atgtgtttgaattcgagattcatcgcttatcaatctaaggtttgtgatt |
174 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41755871 |
acgtgtttgaattcgagattcatcgcttatcaatctaaggtttgtgatt |
41755823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University