View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8768_low_1 (Length: 552)
Name: NF8768_low_1
Description: NF8768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8768_low_1 |
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| [»] scaffold0321 (1 HSPs) |
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Alignment Details
Target: scaffold0321 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 20 - 539
Target Start/End: Original strand, 16071 - 16589
Alignment:
| Q |
20 |
atcaccacaaaatccattcgttaacttcacacacattccttcacctccacctccacatcagcaggctcctatgaagtcacctcttcctgcacctccaccg |
119 |
Q |
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| T |
16071 |
atcaccacaaaatccattcgttaacttcacacacattccttcacctccacctccacatcagcaggctcctatgaagtcacctcttcctgcacctccaccg |
16170 |
T |
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| Q |
120 |
atgaagtcacctcttcctccacctccaccggcctctccaccggcctcaagttcattcggaggtctgggttgggctgttttggtgattggtgtcattgcag |
219 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16171 |
atgaagtcacctcttcctccacctccacaggcctctccaccggcctcaagttcattcggaggtctgggttgggctgttttggtgattggtgtcattgcag |
16270 |
T |
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| Q |
220 |
cgttctttgtgggttactgctgcagaatccgccatagtggagtcgaagcagctgaagaagagtctattgatgaaaatgatttgacataggtggatgaagt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16271 |
cgttctttgtgggttactgctgcagaatccgccatagtggagtcgaagcagctgaagaagagtctattgatgaaaatgatttgacataggtggatgaagt |
16370 |
T |
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| Q |
320 |
atgattataccataggcatatgcatttttcatacacatgtatttttaactagacattatcatgtgatcttccacgtcctatatctgtactgctcttcaac |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
16371 |
atgattataccataggcatatgcatttttcatacacatgtatttttaactagacattatcatgtgatctttcacgtcctatatttgtactgctcttcaac |
16470 |
T |
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| Q |
420 |
aatcatttattatcttgatggtttttcgaaccatctctttatatatttatagatattaatcatggttgcggtcacaaaaatttatataagcatttttgta |
519 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16471 |
aatcatttatctacttgatggtttttcgaaccatctctttatatatttatagatattaatcatggttgcggtcacaaaaatttatataagca-ttttgta |
16569 |
T |
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| Q |
520 |
ttaaatacatttattgagta |
539 |
Q |
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|||||||||||||||||||| |
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| T |
16570 |
ttaaatacatttattgagta |
16589 |
T |
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