View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8768_low_13 (Length: 237)
Name: NF8768_low_13
Description: NF8768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8768_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 21372457 - 21372678
Alignment:
| Q |
1 |
agttgctcgtccattcggaggatatgcatcagatgttgcagcaagattattcggcatgcgaggaagattatggacactctggatcctccaaaccctagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21372457 |
agttgctcgtccattcggaggatatgcatcagatgttgcagcaagattattcggaatgcgaggaagaatatggacactctggatcctccaaaccctagga |
21372556 |
T |
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| Q |
101 |
ggggttttctgcatatggttaggacgtgcgaatacacttccgatcgcagtactatccatgattctcttctcagttggagcacaagcagcatgtggtgcaa |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21372557 |
ggagttttctgcatatggttaggacgtgcgaatacacttccgatcgcagtactatccatgatcctcttctcagttggagcacaagcagcatgtggtgcaa |
21372656 |
T |
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| Q |
201 |
catttggaatcattccattcat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
21372657 |
catttggaatcattccattcat |
21372678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 21385100 - 21384879
Alignment:
| Q |
1 |
agttgctcgtccattcggaggatatgcatcagatgttgcagcaagattattcggcatgcgaggaagattatggacactctggatcctccaaaccctagga |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21385100 |
agttgctcgtccattcggtggatatgcatcagatgttgcagcaagattattcggtatgcgaggaagattatggacactctggatcctccaaaccctagga |
21385001 |
T |
|
| Q |
101 |
ggggttttctgcatatggttaggacgtgcgaatacacttccgatcgcagtactatccatgattctcttctcagttggagcacaagcagcatgtggtgcaa |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21385000 |
ggagttttctgcatatggttaggacgtgcgaatacacttccgatcgcagtactatccatgatcctcttctcagttggagcacaagcagcatgtggtgcaa |
21384901 |
T |
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| Q |
201 |
catttggaatcattccattcat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
21384900 |
catttggaatcattccattcat |
21384879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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