View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8768_low_2 (Length: 514)
Name: NF8768_low_2
Description: NF8768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8768_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 14 - 448
Target Start/End: Complemental strand, 4359784 - 4359321
Alignment:
| Q |
14 |
tcataataattattttcaaactatatttattttgattattacattacacgatttgaaaaaaggagtattataaaatgtacaaaatataggtgcannnnnn |
113 |
Q |
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| T |
4359784 |
tcataataattattttcaaactatatttattttgattattacattacacgatttgaaaaaaggagtattataaaatgtacaaaatataggtgcatttttt |
4359685 |
T |
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| Q |
114 |
natcgacttttcctaagatttttaactaaaaatacatcttcaatagttacaaaaaattgagtaatttagtttagaaccataggaaaaa---tt--taagg |
208 |
Q |
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| T |
4359684 |
tatcgacttttcctaagatttttaactaaaaatacatcttcaatagttacaaaaaattgagtaatttagtttaaaaccatagaaaaaacacttaaaaagg |
4359585 |
T |
|
| Q |
209 |
aatacatgcacctaattt--------------tacgtccatgattttttaaagtcacgtgacattttcatttagactacacaatctcacgtgagattcaa |
294 |
Q |
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||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4359584 |
aatgcatgcacctaattttttttttcttacaatacgtccatgattttttatagtcacgtgacattttcatttaaactacacaatctcacgtgagattcaa |
4359485 |
T |
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| Q |
295 |
ctacaacctcttaactcttaaggcaacacaaacccacccacccaagcactaaataataaaaccacgtttttctttctccc--ctttccc--------ata |
384 |
Q |
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| T |
4359484 |
ctacaacctcttaactcttaaggcaacacaaacccacccacccaagcactaaataataaaaccacgtttttctttctcccctctttcccatatatatata |
4359385 |
T |
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| Q |
385 |
tatatatagacccattacccttcctcctcaattcatccctttctttgtgtttcaatatctctct |
448 |
Q |
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| T |
4359384 |
tatatatagacccattacccttcctcctcaattcaaccctttctttgtgtttcaatatctctct |
4359321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 384 - 496
Target Start/End: Original strand, 4352866 - 4352977
Alignment:
| Q |
384 |
atatatatagacccattacccttcctcctcaattcatccctttctttgtgtttcaatatctctctctccnnnnnnntaatctctctagctatacctcttt |
483 |
Q |
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||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
4352866 |
atatatatacacccatttcccttcctcttcaattcatccctttctttgtgtttcaatatctctctc-caaaaaataaaatctctctagctatacctcttt |
4352964 |
T |
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| Q |
484 |
ctctctttcaaat |
496 |
Q |
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|| || ||||||| |
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| T |
4352965 |
ctttccttcaaat |
4352977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 426
Target Start/End: Original strand, 4349463 - 4349507
Alignment:
| Q |
382 |
atatatatatagacccattacccttcctcctcaattcatcccttt |
426 |
Q |
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| T |
4349463 |
atatatatatatacccatcacccttcctcttcaattcatcccttt |
4349507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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