View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8768_low_3 (Length: 425)
Name: NF8768_low_3
Description: NF8768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8768_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 14723078 - 14723484
Alignment:
| Q |
1 |
atggactcttactttagagaagattgttgttggaaaggatgagtaagtctatgaatggatggactctttctttatagtttctaccagttgaaagccaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14723078 |
atggactcttactttagagaagattgttgttggaaaggatgagtaagtctatgaatggatggactctttctttatagtttctaccagttgaaagccaata |
14723177 |
T |
|
| Q |
101 |
gtcaactctgtatgtgctctttgaatggtcaaccatattgctctctgttcattttgcattcttctaaagtgcctcatgtctttaacaattccatctttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14723178 |
gtcaactctgtatgtgctctttgaatggtcaaccatattgctctctgttcattttgcattcttctaaagtgcctcatgtctttaacaattccatctttaa |
14723277 |
T |
|
| Q |
201 |
ggtttcctatatcccttgtccaccatgcttctttcatgacaaccaaggtgttccccagttcttcatgcccggttcgatatgtgtatacaaaaggtaggtg |
300 |
Q |
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| T |
14723278 |
ggtttcctatatcccttgtccaccatgcttctttcatgacaaccaaggtgttccccagttcttcatgcccggttcgatatgtgtatacaaaaggtaggtg |
14723377 |
T |
|
| Q |
301 |
gtctgatggataatcaatgagggacatagnnnnnnnaccaataaacggccagttaaagactgttaaaaagtttttaggatcaatttcatataaacaaaga |
400 |
Q |
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| T |
14723378 |
gtctgatggataatcaatgagggacatagtttttttaccaataaacggccagttaaagactgttaaaaagtttttaggatcaatttcatataaacaaaga |
14723477 |
T |
|
| Q |
401 |
cttcttt |
407 |
Q |
| |
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||||||| |
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| T |
14723478 |
cttcttt |
14723484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 17601114 - 17600854
Alignment:
| Q |
1 |
atggactcttactttagagaagattgttgttggaaaggatgagtaagtctatgaatggatggactctttctttatagtttctaccagttgaaagccaata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17601114 |
atggactcttactttagagaagattgttgttagaaaggatgagtaagtctatgaatggatggactctttctttatagtttctaccagttgaaagccaata |
17601015 |
T |
|
| Q |
101 |
gtcaactctgtatgtgctctttgaatggtcaaccatattgctctctgttcattttgcattcttctaaagtgcctcatgtctttaacaattccatctttaa |
200 |
Q |
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| T |
17601014 |
gtcaactctgtatgtgctctttgaatggtcaaccatattgctctctgttcattttgcattcttctaaagtgcctcatgtctttaacaattccatctttaa |
17600915 |
T |
|
| Q |
201 |
ggtttcctatatcccttgtccaccatgcttctttcatgacaaccaaggtgttccccagttc |
261 |
Q |
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| T |
17600914 |
ggtttcctatatcccttgtccaccatgcttctttcatgacaaccaaggtattccccagttc |
17600854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 377
Target Start/End: Complemental strand, 17600220 - 17600112
Alignment:
| Q |
271 |
ggttcgatatgtgtatacaaaaggta-ggtggtctgatggataatcaatgagggacatagnnnnnnnaccaataaacggccagttaaagac--tgttaaa |
367 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
17600220 |
ggttcgatatgtgtatacaaaaggtaaggtggtctgatggataatcaatgagggacatagttttttt-ccaataaacggccagttaaagactgtgttaaa |
17600122 |
T |
|
| Q |
368 |
aagtttttag |
377 |
Q |
| |
|
|||||||||| |
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|
| T |
17600121 |
aagtttttag |
17600112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 365 - 407
Target Start/End: Complemental strand, 17600099 - 17600057
Alignment:
| Q |
365 |
aaaaagtttttaggatcaatttcatataaacaaagacttcttt |
407 |
Q |
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| T |
17600099 |
aaaaagtttttaggatcaatttcatataaacgaagacttcttt |
17600057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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