View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8768_low_5 (Length: 350)
Name: NF8768_low_5
Description: NF8768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8768_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 13 - 331
Target Start/End: Original strand, 34129206 - 34129524
Alignment:
| Q |
13 |
gatggacatcaaacagcctagctaaactattcctgtattgatggcaaatctctctctcaagcataaacctatagttaccttgtactgatgtcatttaatg |
112 |
Q |
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| T |
34129206 |
gatggacatcaaacagcctagctaaactattcctatattgatggcaaatctctctctcaagcataaacctatagttaccttgtactgagttcatttaatg |
34129305 |
T |
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| Q |
113 |
tccttaggcattaaaatttgaggtactaataacataaccaaatatacttatggtagttggtaaaagtcgaaattctatacaaagatgcaataaaagtcca |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34129306 |
tccttaggcattaaaatttgaggtactaataacataaccaaatatacttatggtagttggtaaaagtcgaaattctatacaaagatgcaatgaaagtcca |
34129405 |
T |
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| Q |
213 |
ttgaactggagtaagcatcaagtttgtgaggctaagaaatttaagtgcaaaatatacatacaaactcaagatacattaagtatgtgtaggtgctttgtaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34129406 |
ttgaactggagtaagcatcaagtttgtgaggctaagaaatttaagtgcaacatatacatacaaactcaagatacattaagtatgtgtaggtgctttgtaa |
34129505 |
T |
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| Q |
313 |
tttttgctgttgtgttaac |
331 |
Q |
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||||||||||||||||||| |
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| T |
34129506 |
tttttgctgttgtgttaac |
34129524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 13 - 331
Target Start/End: Original strand, 34137796 - 34138116
Alignment:
| Q |
13 |
gatggacatcaaacagcctagctaaactattcctgtattgat--ggcaaatctctctctcaagcataaacctatagttaccttgtactgatgtcatttaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
34137796 |
gatggacatcaaacagcctagctaaactattcctgtatataaacggcaaatctctctctctagcataaacctttagttaccttgtactgatgtcatttaa |
34137895 |
T |
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| Q |
111 |
tgtccttaggcattaaaatttgaggtactaataacataaccaaatatacttatggtagttggtaaaagtcgaaattctatacaaagatgcaataaaagtc |
210 |
Q |
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||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34137896 |
tgtcctttagcattaaaatttgaggtactaataacagaaccaaatatacttatgatagttggtaaaagtcgaaattctatacaaagatgcaataaaagtc |
34137995 |
T |
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| Q |
211 |
cattgaactggagtaagcatcaagtttgtgaggctaagaaatttaagtgcaaaatatacatacaaactcaagatacattaagtatgtgtaggtgctttgt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34137996 |
cattgaactggagtaagcatcaagtttgtgaggctaagaaatttaagtgcaacatatacatacaaactcaagatacattaagtatgtgtaggtgctttgt |
34138095 |
T |
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| Q |
311 |
aatttttgctgttgtgttaac |
331 |
Q |
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||||||||||||||||||||| |
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| T |
34138096 |
aatttttgctgttgtgttaac |
34138116 |
T |
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