View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8768_low_6 (Length: 331)
Name: NF8768_low_6
Description: NF8768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8768_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 14205696 - 14206018
Alignment:
| Q |
1 |
cattctttataagcaacaatcacttgcacataacgtgtggcagcatggatattttcttcccacatgtaagtacctatatagcatgagagatgtaatctac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
14205696 |
cattctttataagcaacaatcacttgcacataacgtgtggtagcatggatattttcttcccacatgtaagtacctatatagcatgaga--tgtaatctac |
14205793 |
T |
|
| Q |
101 |
aattatagttcatttcatcaaatatcaacctattatgggactcgttgatcaatgaaacatcactcctaggcattgtaggataatcttccttcatgtcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14205794 |
aattatagttcatttcatcaaatatcaacctattatgggactcgttgatcaatgaaacatcactcctaggcattgtaggataatcttcattcatgtcttc |
14205893 |
T |
|
| Q |
201 |
actcaagtgcataactcttcaactgatcttcatctaacacaaaatctgcagcaaccaatgcatcacataattacattaatataatcagcagtcaatgaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14205894 |
actcaagtgcataactcttcaactgatcttcatctaacactaaatctgcagcaaccaatgcatcacataattacattaatataatcagcagtcaatgaag |
14205993 |
T |
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| Q |
301 |
gcagtgttataaagcttactgaatg |
325 |
Q |
| |
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||| ||||||||||||||||||||| |
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| T |
14205994 |
gcattgttataaagcttactgaatg |
14206018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 31405911 - 31406234
Alignment:
| Q |
1 |
cattctttataagcaacaatcacttgcacataacgtgtggcagcatggatattttcttcccacatgtaagtacctatatagcatgagagatgtaatctac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31405911 |
cattctttataagcaacaatcacttgcacataacgtgtggaagcatggatattttcttcccacatgtaagtacctatatagcatgaga--tgtaatctac |
31406008 |
T |
|
| Q |
101 |
aattatagttcatttcatcaaatatcaacctattatgggactcgttgatcaatgaaacatcactcctaggcattgtaggataatcttccttcatgtcttc |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31406009 |
aattatagttcatttcatcaaataacaacctattatgggactcgttgatcaatgaaacatcactcctaggcattgtaggataatcttcattcatgtcttc |
31406108 |
T |
|
| Q |
201 |
actcaagtgcataactcttcaactgatcttcatctaacacaaaatctgcagcaaccaatgcatcacataattacattaatataatcagcagtcaatgaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31406109 |
actcaagtgcataactcttcaactgatcttcatctaacactaaatctgcagcaaccaatgcatcacataattacattaatataatcagcagtcaatgaag |
31406208 |
T |
|
| Q |
301 |
gcagtgttat-aaagcttactgaatg |
325 |
Q |
| |
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||| |||||| ||||||||||||||| |
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|
| T |
31406209 |
gcattgttataaaagcttactgaatg |
31406234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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