View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8768_low_7 (Length: 307)
Name: NF8768_low_7
Description: NF8768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8768_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 24269630 - 24269748
Alignment:
| Q |
25 |
tgctacccataaccaaagcatcaagcttcaaatccccaacagaatcaacaattttctctcttgcatctccccagtataccttccccaccacagtcaccta |
124 |
Q |
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| T |
24269630 |
tgctacccataaccaaagcatcaagcttcaaatccccaacagaatcaacaattttctctcttgcatctccccagtataccttccccaccacagtcaccta |
24269729 |
T |
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| Q |
125 |
tacacaattcaacttaagt |
143 |
Q |
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||||||||||||||||||| |
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| T |
24269730 |
tacacaattcaacttaagt |
24269748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 211 - 297
Target Start/End: Original strand, 24269832 - 24269918
Alignment:
| Q |
211 |
cctgtttctgtctagaagcagtatcaagtatgtccaaaacctcagcatcagggtccacttcatactggtgcacaacgttcttctcac |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24269832 |
cctgtttctgtctagaagcagtatcaagtatgtccaaaacctcagcatcagggtccacttcatactggtgcaccacgttcttctcac |
24269918 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 13604805 - 13604690
Alignment:
| Q |
28 |
tacccataaccaaagcatcaagcttcaaatccccaacagaatcaacaattttctctcttgcatctccccagtataccttccccaccacagtcacctatac |
127 |
Q |
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| T |
13604805 |
tacccataaccaaagcatcaagcttcaaatctccaacataatcaacaatcttctctcttgcatcaccccaatataccttagccaccacagtcacctatac |
13604706 |
T |
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| Q |
128 |
acaattcaacttaagt |
143 |
Q |
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||||||| |||||||| |
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| T |
13604705 |
acaattcgacttaagt |
13604690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 213 - 297
Target Start/End: Complemental strand, 13604586 - 13604502
Alignment:
| Q |
213 |
tgtttctgtctagaagcagtatcaagtatgtccaaaacctcagcatcagggtccacttcatactggtgcacaacgttcttctcac |
297 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| | ||||||||||| |
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| T |
13604586 |
tgtttctatctagaagcagtatcaagtatgtccaaaacctcagcatcaagttccacttcatactggtgcaccatgttcttctcac |
13604502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 53004791 - 53004714
Alignment:
| Q |
25 |
tgctacccataaccaaagcatcaagcttcaaatccccaacagaatcaacaattttctctcttgcatctccccagtata |
102 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |||||||||| ||| |||||||||| ||||| |||| |
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| T |
53004791 |
tgctacccataatcaaagcatcaagcttcaaatccccaacataatcaacaatcttccctcttgcatcaccccaatata |
53004714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 51856018 - 51856076
Alignment:
| Q |
211 |
cctgtttctgtctagaagcagtatcaagt-atgtccaaaacctcagcatcagggtccac |
268 |
Q |
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||||||| ||||||||||||| ||||||| ||||||||||||||||| ||| ||||||| |
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| T |
51856018 |
cctgtttttgtctagaagcagcatcaagtaatgtccaaaacctcagcgtcaaggtccac |
51856076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 265
Target Start/End: Original strand, 8945204 - 8945259
Alignment:
| Q |
211 |
cctgtttctgtctagaagcagtatcaagt-atgtccaaaacctcagcatcagggtc |
265 |
Q |
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||||||| ||||||||||||| ||||||| ||||||||||||||||| ||| |||| |
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| T |
8945204 |
cctgtttttgtctagaagcagcatcaagtaatgtccaaaacctcagcgtcaaggtc |
8945259 |
T |
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