View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8768_low_9 (Length: 273)
Name: NF8768_low_9
Description: NF8768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8768_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 5105318 - 5105571
Alignment:
| Q |
1 |
gaaaacacaataaagtaagtacatacattacattaatagacacaaaaattattttagctgaagctgaatgaatccatgatctcatctagaccttctgata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5105318 |
gaaaacacaataaagtaagtacatacattacattaatagaca--aaaattattttagctgaagttgaatgaatccatgatctcatctagaccttctgata |
5105415 |
T |
|
| Q |
101 |
tcagtttccaaagaaccagaattacgtccaccattcaaattccaatcattggtagaaccaaaagccttcccaagcaacccttgcaacctttgaggactag |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5105416 |
tcagtttccaatgaaccagaattacgtccaccattcaaattccaatcattggtagaaccaaaagccttcccaagcaacccttgcaacctttgaggactag |
5105515 |
T |
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| Q |
201 |
gataaactttcctttgcaaaaatcctgaataagactctaaaaactcagcataaact |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5105516 |
gataaactttcctttgcaaaaatcctgaataagactctaaaaactcagcataaact |
5105571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 41417404 - 41417239
Alignment:
| Q |
1 |
gaaaacacaataaagtaagtacatacattacattaatagacacaaaaattattttagctgaagctgaatgaatccatgatctcatctagaccttctgata |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
41417404 |
gaaaacacaataaattaagtacatacattacattaatggacacaaaaattattttagcggaagctgaatgaattcatgatctcatctagaccttctgata |
41417305 |
T |
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| Q |
101 |
tcagtttccaaagaaccagaattacgtccaccattcaaattccaatcattggtagaaccaaaagcc |
166 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41417304 |
tcagtttccaaagaaccagaattacgtccaccatttaaattccaatcattggtagaaccaaaagcc |
41417239 |
T |
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