View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8769_high_3 (Length: 313)
Name: NF8769_high_3
Description: NF8769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8769_high_3 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 12074442 - 12074720
Alignment:
| Q |
18 |
atttgattggtagtggagttccagtggtgagttcccttgagtagtagcattgacagtttaaaaagttcaattttattttagaaatcacaactttgatccc |
117 |
Q |
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| T |
12074442 |
atttgattggtagtggagttccagtggtgagtttc-ttgagtagtagcattcacagtttaaaaagttcaattttattttagaaatcacaactttgatccc |
12074540 |
T |
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| Q |
118 |
nnnnnnnnnnctcttcactttcgttgttgattcagctcaaactaatgtcgtttcattgagttgcaactctacatggatttgagaaattcatttcatcatt |
217 |
Q |
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| T |
12074541 |
ttttttctctctcttcattttctttgttgattcagctcaaactaatgtcgtttcattgagttgcaattctacatggattttagaaattcatttcatcatt |
12074640 |
T |
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| Q |
218 |
tgcaaaccataatggtttagactttagacatacttaaaggtctgaactatgcaaactctaatcgtggtttctgattgttc |
297 |
Q |
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| T |
12074641 |
tgcaaaccataatggtttagactttagacatacttaaaggtctgaactatgcaaactctaatcgtggtttctgattgttc |
12074720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 59 - 301
Target Start/End: Original strand, 12054015 - 12054251
Alignment:
| Q |
59 |
tagtagcattgacagtttaaaaagttcaattttatttt-agaaatcacaactttgatcccnnnnnnnnnnctcttcactttcgttgttgattcagctcaa |
157 |
Q |
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| T |
12054015 |
tagtagcattgacaggttaaaaagttcaattttttttttagaaatcacaactttgatcccttttttt---ctcttcattttcttcgttgattcagctcaa |
12054111 |
T |
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| Q |
158 |
actaatgtcgtttcattgagttgcaactcta---catggatttgagaaattcatttcatcatttgcaaaccataatggtttagactttagacatacttaa |
254 |
Q |
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| T |
12054112 |
actaatgtcgtttcattgagctgctactctacttcttggatttgagaatttaatttcatcatttgcaaaccctaatgg-------tttagacatacttaa |
12054204 |
T |
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| Q |
255 |
aggtctgaactatgcaaactctaatcgtggtttctgattgttcatct |
301 |
Q |
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| T |
12054205 |
aggtccgaactatgccaactataatcgtagtttttgattgttcatct |
12054251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 53 - 301
Target Start/End: Original strand, 12075882 - 12076121
Alignment:
| Q |
53 |
cttgagtagtagcattgacagtttaaaaagttcaattttattttagaaatcacaactttgatcccnnnnnnnnnnctcttcactttcgttgttgattcag |
152 |
Q |
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| T |
12075882 |
cttgagcagtagcattgacagtttaaaaagttcaatttt-ttttagacgtcacaactttgatcccttttttt---ctcttcattttcttcgttgattcaa |
12075977 |
T |
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| Q |
153 |
ctcaaactaatgtcgtttcattgagttgcaactctac---atggatttgagaaattcatttcatcatttgcaaaccataatggtttagactttagacata |
249 |
Q |
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| T |
12075978 |
ctcaaacgaatgtcgtttcattgagctgcaa-tctactttttggatttgagaaattaatttcatcatttgcaaaccctaatgg-------tttagacata |
12076069 |
T |
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| Q |
250 |
cttaaaggtctgaactatgcaaactctaatcgtggtttctgattgttcatct |
301 |
Q |
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| T |
12076070 |
tttaaaggtctgaactatgcaaactcttatcgtagtttttgattgctcatct |
12076121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 12062760 - 12062818
Alignment:
| Q |
59 |
tagtagcattgacagtttaaaaagttcaattttattttagaaatcacaactttgatccc |
117 |
Q |
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| T |
12062760 |
tagtagcattgacagtttaaaatgttcaattttttttttgaaatcacaactttgatccc |
12062818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 12059454 - 12059502
Alignment:
| Q |
191 |
tggatttgagaaattcatttcatcatttgcaaaccataatggtttagac |
239 |
Q |
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| T |
12059454 |
tggattttagaaattcattccatcatttgcaaacactaatggttcagac |
12059502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 12064824 - 12064872
Alignment:
| Q |
191 |
tggatttgagaaattcatttcatcatttgcaaaccataatggtttagac |
239 |
Q |
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| T |
12064824 |
tggattttagaaattcattccatcatttgcaaacactaatggttcagac |
12064872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 20951 - 20994
Alignment:
| Q |
73 |
gtttaaaaagttcaattttattttagaaatcacaactttgatcc |
116 |
Q |
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| T |
20951 |
gtttaaaaagttcaatctttttttagaaatcacaactttgatcc |
20994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 16430969 - 16431012
Alignment:
| Q |
73 |
gtttaaaaagttcaattttattttagaaatcacaactttgatcc |
116 |
Q |
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| T |
16430969 |
gtttaaaaagttcaatctttttttagaaatcacaactttgatcc |
16431012 |
T |
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