View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8769_low_1 (Length: 582)

Name: NF8769_low_1
Description: NF8769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8769_low_1
NF8769_low_1
[»] chr6 (19 HSPs)
chr6 (19-460)||(9829857-9830299)
chr6 (340-419)||(1986211-1986290)
chr6 (341-419)||(31323821-31323899)
chr6 (358-419)||(8437816-8437877)
chr6 (342-419)||(35003766-35003843)
chr6 (343-419)||(28004650-28004726)
chr6 (344-419)||(13422139-13422214)
chr6 (344-409)||(2282415-2282480)
chr6 (332-401)||(24547188-24547257)
chr6 (527-566)||(2281001-2281040)
chr6 (527-568)||(25971041-25971082)
chr6 (527-568)||(25975481-25975522)
chr6 (527-566)||(29369514-29369553)
chr6 (527-566)||(29372069-29372108)
chr6 (527-566)||(33004773-33004812)
chr6 (527-566)||(33045782-33045821)
chr6 (337-419)||(7343264-7343344)
chr6 (337-418)||(26395276-26395357)
chr6 (370-419)||(28596082-28596131)
[»] chr5 (28 HSPs)
chr5 (482-568)||(37609739-37609822)
chr5 (341-419)||(42324905-42324983)
chr5 (352-419)||(968318-968385)
chr5 (340-419)||(39030570-39030649)
chr5 (341-426)||(38958061-38958146)
chr5 (527-566)||(32674956-32674995)
chr5 (527-568)||(38095512-38095553)
chr5 (340-419)||(17555968-17556048)
chr5 (345-419)||(19644427-19644501)
chr5 (341-419)||(33669952-33670030)
chr5 (527-568)||(16678766-16678807)
chr5 (342-419)||(36058766-36058843)
chr5 (527-568)||(38936314-38936355)
chr5 (347-419)||(5727723-5727794)
chr5 (355-419)||(15119304-15119368)
chr5 (347-395)||(17234563-17234611)
chr5 (527-566)||(12655278-12655317)
chr5 (527-566)||(20105095-20105134)
chr5 (527-566)||(23184063-23184102)
chr5 (527-566)||(23188330-23188369)
chr5 (527-566)||(30090355-30090394)
chr5 (344-419)||(33498368-33498443)
chr5 (527-566)||(34761324-34761363)
chr5 (380-419)||(39030627-39030666)
chr5 (527-566)||(39878158-39878197)
chr5 (360-419)||(42708589-42708648)
chr5 (343-419)||(16500564-16500640)
chr5 (352-400)||(23344907-23344955)
[»] chr3 (25 HSPs)
chr3 (332-424)||(29637449-29637541)
chr3 (346-419)||(32221500-32221573)
chr3 (342-419)||(31280162-31280239)
chr3 (340-426)||(26104218-26104304)
chr3 (527-568)||(18256303-18256344)
chr3 (342-413)||(3956171-3956242)
chr3 (527-566)||(854647-854686)
chr3 (527-566)||(18198775-18198814)
chr3 (527-566)||(26951579-26951618)
chr3 (527-566)||(36087591-36087630)
chr3 (527-566)||(38655924-38655963)
chr3 (527-566)||(49562410-49562449)
chr3 (530-568)||(36006255-36006293)
chr3 (340-424)||(47783080-47783164)
chr3 (527-566)||(4594184-4594223)
chr3 (527-566)||(11826548-11826587)
chr3 (527-566)||(16651492-16651531)
chr3 (343-426)||(26914476-26914559)
chr3 (527-566)||(26947920-26947959)
chr3 (527-566)||(36091429-36091468)
chr3 (527-566)||(36947158-36947197)
chr3 (539-568)||(53521078-53521107)
chr3 (365-409)||(5307344-5307388)
chr3 (526-566)||(12260899-12260939)
chr3 (538-566)||(52418807-52418835)
[»] scaffold0097 (4 HSPs)
scaffold0097 (340-409)||(37928-37997)
scaffold0097 (527-566)||(49096-49135)
scaffold0097 (527-566)||(40446-40485)
scaffold0097 (527-566)||(51918-51957)
[»] chr2 (41 HSPs)
chr2 (340-419)||(2884263-2884342)
chr2 (349-419)||(44726815-44726885)
chr2 (340-419)||(38935387-38935466)
chr2 (358-419)||(17437168-17437229)
chr2 (341-426)||(19924304-19924389)
chr2 (340-419)||(944778-944857)
chr2 (340-419)||(7932750-7932829)
chr2 (340-419)||(16180459-16180538)
chr2 (340-387)||(24037608-24037655)
chr2 (341-419)||(10459273-10459351)
chr2 (358-419)||(31469078-31469139)
chr2 (341-409)||(43398863-43398931)
chr2 (527-566)||(207806-207845)
chr2 (527-566)||(1512832-1512871)
chr2 (527-566)||(26455966-26456005)
chr2 (527-566)||(27997492-27997531)
chr2 (527-566)||(28098862-28098901)
chr2 (380-419)||(30517918-30517957)
chr2 (527-566)||(40605428-40605467)
chr2 (340-419)||(40823553-40823632)
chr2 (352-419)||(41374565-41374632)
chr2 (337-409)||(4445885-4445957)
chr2 (341-409)||(35311210-35311277)
chr2 (337-409)||(41912098-41912170)
chr2 (527-566)||(184192-184231)
chr2 (527-566)||(976085-976124)
chr2 (527-566)||(1916810-1916849)
chr2 (527-566)||(2449426-2449465)
chr2 (347-418)||(4592447-4592518)
chr2 (527-566)||(5013568-5013607)
chr2 (342-409)||(11386326-11386393)
chr2 (527-566)||(20890739-20890778)
chr2 (527-566)||(35432177-35432215)
chr2 (358-409)||(35693935-35693986)
chr2 (527-566)||(36437644-36437683)
chr2 (341-419)||(4225002-4225080)
chr2 (352-401)||(18007535-18007584)
chr2 (527-568)||(23455696-23455737)
chr2 (368-409)||(43465501-43465542)
chr2 (526-566)||(6123771-6123811)
chr2 (340-419)||(16564385-16564462)
[»] chr1 (29 HSPs)
chr1 (340-419)||(3694011-3694090)
chr1 (352-419)||(19758307-19758374)
chr1 (358-419)||(3739856-3739917)
chr1 (342-419)||(30693342-30693419)
chr1 (346-401)||(10498356-10498411)
chr1 (368-419)||(35310304-35310355)
chr1 (352-419)||(47543606-47543673)
chr1 (527-566)||(2045250-2045289)
chr1 (340-419)||(5056318-5056397)
chr1 (527-566)||(45501289-45501328)
chr1 (523-565)||(21056874-21056916)
chr1 (342-408)||(37918940-37919006)
chr1 (527-566)||(7480571-7480610)
chr1 (527-566)||(9533947-9533986)
chr1 (527-566)||(13926303-13926342)
chr1 (527-566)||(29245513-29245552)
chr1 (527-566)||(38210995-38211034)
chr1 (527-566)||(39513257-39513296)
chr1 (527-566)||(42496655-42496694)
chr1 (527-566)||(45503534-45503573)
chr1 (527-566)||(48651077-48651116)
chr1 (527-566)||(48960785-48960824)
chr1 (527-566)||(49787358-49787397)
chr1 (527-566)||(50708934-50708973)
chr1 (343-401)||(6061487-6061545)
chr1 (358-419)||(29855065-29855126)
chr1 (527-568)||(37891536-37891577)
chr1 (530-566)||(26211713-26211749)
chr1 (372-404)||(38791229-38791261)
[»] chr7 (24 HSPs)
chr7 (337-407)||(32652427-32652497)
chr7 (358-419)||(6803314-6803375)
chr7 (337-419)||(23971206-23971287)
chr7 (342-419)||(30794448-30794525)
chr7 (527-566)||(7893815-7893854)
chr7 (342-409)||(18732016-18732083)
chr7 (527-566)||(22007038-22007077)
chr7 (527-566)||(26168902-26168941)
chr7 (380-419)||(27147604-27147643)
chr7 (527-566)||(29956535-29956574)
chr7 (527-566)||(32038501-32038540)
chr7 (527-566)||(32660282-32660321)
chr7 (527-566)||(46909406-46909445)
chr7 (342-401)||(47967938-47967997)
chr7 (358-416)||(16866443-16866501)
chr7 (347-409)||(44816484-44816546)
chr7 (346-419)||(5026147-5026220)
chr7 (352-419)||(1554871-1554938)
chr7 (340-419)||(3769777-3769856)
chr7 (527-566)||(7888925-7888964)
chr7 (527-566)||(13398415-13398454)
chr7 (527-566)||(45115888-45115927)
chr7 (526-566)||(16719958-16719998)
chr7 (527-563)||(31100199-31100235)
[»] scaffold2113 (1 HSPs)
scaffold2113 (358-419)||(618-679)
[»] chr4 (25 HSPs)
chr4 (347-416)||(24788646-24788715)
chr4 (347-416)||(24819545-24819614)
chr4 (340-420)||(54235246-54235326)
chr4 (364-419)||(30848640-30848695)
chr4 (342-419)||(24980651-24980728)
chr4 (527-568)||(26602412-26602453)
chr4 (380-419)||(2734186-2734225)
chr4 (527-566)||(16909115-16909154)
chr4 (527-566)||(30388031-30388070)
chr4 (527-566)||(52682792-52682831)
chr4 (341-419)||(12276827-12276905)
chr4 (528-566)||(28389462-28389500)
chr4 (530-568)||(36895658-36895696)
chr4 (342-419)||(4423156-4423233)
chr4 (527-568)||(8121114-8121155)
chr4 (367-419)||(33759429-33759480)
chr4 (353-416)||(3249695-3249758)
chr4 (340-391)||(5496875-5496926)
chr4 (527-566)||(21382709-21382748)
chr4 (527-566)||(29359215-29359254)
chr4 (527-566)||(31448460-31448499)
chr4 (527-566)||(42347798-42347837)
chr4 (338-399)||(43095258-43095319)
chr4 (526-566)||(41859873-41859913)
chr4 (349-393)||(43541890-43541934)
[»] scaffold0034 (1 HSPs)
scaffold0034 (341-400)||(94972-95031)
[»] chr8 (17 HSPs)
chr8 (341-419)||(7974811-7974889)
chr8 (342-400)||(11114262-11114320)
chr8 (340-419)||(9548073-9548152)
chr8 (527-566)||(23827818-23827857)
chr8 (344-414)||(15114629-15114699)
chr8 (342-415)||(33557801-33557874)
chr8 (341-409)||(13209981-13210049)
chr8 (526-566)||(24011856-24011896)
chr8 (344-407)||(29797968-29798034)
chr8 (527-566)||(14994481-14994520)
chr8 (527-566)||(19961687-19961726)
chr8 (340-419)||(35901059-35901138)
chr8 (527-566)||(37983448-37983487)
chr8 (380-419)||(44080739-44080778)
chr8 (527-565)||(18492360-18492398)
chr8 (527-559)||(18266003-18266035)
chr8 (527-559)||(18275016-18275048)
[»] scaffold0374 (1 HSPs)
scaffold0374 (527-566)||(2029-2068)
[»] scaffold0121 (1 HSPs)
scaffold0121 (527-566)||(45635-45674)
[»] scaffold0009 (1 HSPs)
scaffold0009 (341-395)||(51246-51300)
[»] scaffold0067 (1 HSPs)
scaffold0067 (340-419)||(35947-36026)
[»] scaffold0072 (1 HSPs)
scaffold0072 (341-419)||(20387-20465)
[»] scaffold0027 (1 HSPs)
scaffold0027 (347-400)||(13200-13253)
[»] scaffold0126 (1 HSPs)
scaffold0126 (359-419)||(28174-28234)


Alignment Details
Target: chr6 (Bit Score: 411; Significance: 0; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 19 - 460
Target Start/End: Complemental strand, 9830299 - 9829857
Alignment:
Q  19 gtttcgtcaatcagtgactgctaacttagaaatgcgtggttggtaacagtcaataccatgatatggttgg-ccatctttaattttagtagtgtaagcaac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  9830299 gtttcgtcaatcagtgactgctaacttagaaatgcgtggttggtaacagtcaataccatgatatggttgggccatctttaattttagtagtggaagcaac 9830200  T
Q  118 tcaacacaagttttcttcaactaaaatttttgctttcattacatttgagccaaatgttacttgacaaggccttattttgttgcaataaggacctataaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  9830199 tcaacacaagttttcttcaactaaaatttttgctttcattacatttgagccaaattttacttgacaatgccttattttgttgcaataaggacctataaat 9830100  T
Q  218 taattagaagtgttttacgggttgttcttgcggaaaggtttgactcaacaaacaaaggtttaaaagtatttaggtttaatgtccaatacacattaaaaat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9830099 taattagaagtgttttacgggttgttcttgcggaaaggtttgactcaacaaacaaaggtttaaaagtatttaggtttaatgtccaatacacattaaaaat 9830000  T
Q  318 atattctctctcccaaaatataagtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatat 417  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9829999 atattctctctcccaaaatataagtcaacataaattgatgtatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatat 9829900  T
Q  418 ttaggaacgttagggagtatcttttatcgaacatatggaagaa 460  Q
    ||||| |||||||||||||||| ||||||||||||||||||||    
T  9829899 ttagggacgttagggagtatctcttatcgaacatatggaagaa 9829857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 340 - 419
Target Start/End: Complemental strand, 1986290 - 1986211
Alignment:
Q  340 agtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||||| || |||||||||||| ||||||||||| |||| ||||||||||| ||||| || ||||||||||||||    
T  1986290 agtcaacataagttaatatatttggtataaattttaaactaaatgcattaatttttattgaccaacttttacttatattt 1986211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 341 - 419
Target Start/End: Complemental strand, 31323899 - 31323821
Alignment:
Q  341 gtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    |||||||||| ||||| ||| ||||||||||||| ||||||||||||||| |||||||||| ||||||| |||| ||||    
T  31323899 gtcaacataagttgatgtatctggtacaaattttgaacaaaatacattaacttttgttgaccaatttttgcttacattt 31323821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 358 - 419
Target Start/End: Original strand, 8437816 - 8437877
Alignment:
Q  358 tatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||||| ||||||||||||||    
T  8437816 tatttggtacaaattttgaatcaaatacattaatttttgttgactaaattttacttatattt 8437877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 342 - 419
Target Start/End: Complemental strand, 35003843 - 35003766
Alignment:
Q  342 tcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||| ||||||||||| ||||||||||| ||  |||||||||||||||| || || |||||||||||||||||    
T  35003843 tcaacataagttgatatattttgtacaaattttgaatcaaatacattaatttttattaaccaatttttacttatattt 35003766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 343 - 419
Target Start/End: Original strand, 28004650 - 28004726
Alignment:
Q  343 caacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||| ||||| || ||||||||||||||||| | | ||||||||||| |||||||||||||||||  |||||||||    
T  28004650 caacaaaaattaatgtatttggtacaaattttgagccaaatacattaacttttgttgactaattttcccttatattt 28004726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 419
Target Start/End: Complemental strand, 13422214 - 13422139
Alignment:
Q  344 aacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    |||||||||| |||||| ||||| ||||||||||  |||||||||||||||| ||||  |||||||||||| ||||    
T  13422214 aacataaattaatatatctggtataaattttaaatcaaatacattaatttttattgagcaatttttacttacattt 13422139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 409
Target Start/End: Complemental strand, 2282480 - 2282415
Alignment:
Q  344 aacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaattttt 409  Q
    ||||||||||||| |||||| ||||| |||| ||| ||||||||||| |||||||||| |||||||    
T  2282480 aacataaattgatgtatttgatacaatttttgaactaaatacattaacttttgttgaccaattttt 2282415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 401
Target Start/End: Original strand, 24547188 - 24547257
Alignment:
Q  332 aaaatataagtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgac 401  Q
    |||| |||||||||||||||||||| |||||| || ||||||||||| || ||||||| || ||||||||    
T  24547188 aaaaaataagtcaacataaattgatgtatttgatataaattttaaaccaagtacattagttcttgttgac 24547257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 2281040 - 2281001
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  2281040 tacacattacggaaaacttctctgtagaccacatttgatg 2281001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 527 - 568
Target Start/End: Original strand, 25971041 - 25971082
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatgtc 568  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  25971041 tacacattacggaaaacttctctctagaccacatttgatgtc 25971082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 527 - 568
Target Start/End: Original strand, 25975481 - 25975522
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatgtc 568  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  25975481 tacacattacggaaaacttctctctagaccacatttgatgtc 25975522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 29369514 - 29369553
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  29369514 tacacattacggaaaacttctttgtagaccacatttgatg 29369553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 29372069 - 29372108
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  29372069 tacacattacggaaaacttctttgtagaccacatttgatg 29372108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 33004773 - 33004812
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  33004773 tacacattacggaaaacttctttgtagaccacatttgatg 33004812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 33045782 - 33045821
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  33045782 tacacattacggaaaacttctctgtagaccacacttgatg 33045821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 419
Target Start/End: Original strand, 7343264 - 7343344
Alignment:
Q  337 ataagtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    |||||||||||||| || || |||||||||||| ||| ||| ||| || ||||| |||||||||  |||||||||||||||||    
T  7343264 ataagtcaacataagtt-atgtatttggtacaattttgaaataaa-tatattaacttttgttgatcaatttttacttatattt 7343344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 418
Target Start/End: Original strand, 26395276 - 26395357
Alignment:
Q  337 ataagtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatatt 418  Q
    |||| |||||||||||| || |||||  ||| || ||| ||  ||| |||||||||||| |||||||| |||||||||||||    
T  26395276 ataaatcaacataaattaatgtattttatacgaactttgaattaaacacattaatttttattgactaaattttacttatatt 26395357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 419
Target Start/End: Complemental strand, 28596131 - 28596082
Alignment:
Q  370 attttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||| ||| ||||| |||||||||||||||| |||||||||||| ||||    
T  28596131 attttgaaccaaatatattaatttttgttgaccaatttttacttacattt 28596082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 482 - 568
Target Start/End: Complemental strand, 37609822 - 37609739
Alignment:
Q  482 caaaacaaagtgctacacatcattgtaacaaaacnnnnnnngtgttacacattatggaaaacttctctgtagaccacatttgatgtc 568  Q
    |||||||||||||||||||||||||||||||||        ||||||||||||| ||||||||||||||||||||||||||||||||    
T  37609822 caaaacaaagtgctacacatcattgtaacaaaa---aaaaagtgttacacattacggaaaacttctctgtagaccacatttgatgtc 37609739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 341 - 419
Target Start/End: Original strand, 42324905 - 42324983
Alignment:
Q  341 gtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||| |||||||||| ||||||||| ||||||||||  ||||||||||| |||||||||| |||||||||||||||||    
T  42324905 gtcaatataaattgatgtatttggtataaattttaaaacaaatacattaacttttgttgaccaatttttacttatattt 42324983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 352 - 419
Target Start/End: Original strand, 968318 - 968385
Alignment:
Q  352 ttgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||| ||||||||||||||||| ||| ||||| ||||||||||||||||| ||||||||||||||||    
T  968318 ttgatgtatttggtacaaattttgaactaaatatattaatttttgttgactcatttttacttatattt 968385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 340 - 419
Target Start/End: Complemental strand, 39030649 - 39030570
Alignment:
Q  340 agtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    |||||||| || || || ||||||||||||||||| ||| ||||||||||| |||||||||| ||||||| |||||||||    
T  39030649 agtcaacaaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttatattt 39030570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 426
Target Start/End: Complemental strand, 38958146 - 38958061
Alignment:
Q  341 gtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatatttaggaacg 426  Q
    |||||||| | ||||| ||||||||||||| ||| ||| ||||||||||| ||||||| |  ||||||||||||||||| ||||||    
T  38958146 gtcaacatgagttgatgtatttggtacaaaatttgaaccaaatacattaacttttgttaatcaatttttacttatattttggaacg 38958061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 32674995 - 32674956
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32674995 tacacattatggaaaacttctctgtagaccacatttgatg 32674956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 527 - 568
Target Start/End: Original strand, 38095512 - 38095553
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatgtc 568  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  38095512 tacacattacggaaaacttctctgtagaccacatttgatgtc 38095553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 419
Target Start/End: Original strand, 17555968 - 17556048
Alignment:
Q  340 agtcaacataaattgatatatttggtacaaattttaaacaaaatacattaa-tttttgttgactaatttttacttatattt 419  Q
    ||||||| ||| |||||||||||| || ||||||| ||| | ||||||||| |||||||| || |||||||||||||||||    
T  17555968 agtcaacgtaagttgatatatttgatataaattttgaaccacatacattaactttttgttcaccaatttttacttatattt 17556048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 419
Target Start/End: Original strand, 19644427 - 19644501
Alignment:
Q  345 acataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    |||||| ||||| ||||| ||| ||||||| ||| |||||| ||||||||||||||  |||| ||||||||||||    
T  19644427 acataagttgatgtatttagtataaattttgaaccaaatacgttaatttttgttgatcaattcttacttatattt 19644501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 419
Target Start/End: Original strand, 33669952 - 33670030
Alignment:
Q  341 gtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    |||||||||| ||  | ||| ||||||||||||||||| ||||||||||| |||| ||||| ||||||| |||| ||||    
T  33669952 gtcaacataagttagtgtatctggtacaaattttaaaccaaatacattaactttttttgaccaatttttgcttacattt 33670030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 527 - 568
Target Start/End: Original strand, 16678766 - 16678807
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatgtc 568  Q
    ||||||||| | ||||||||||||||||||||||||||||||    
T  16678766 tacacattacgaaaaacttctctgtagaccacatttgatgtc 16678807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 342 - 419
Target Start/End: Complemental strand, 36058843 - 36058766
Alignment:
Q  342 tcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    |||| ||||||||||||||||  |||||||||||||  | |||||||||||||  ||||| |||||||  ||||||||    
T  36058843 tcaatataaattgatatattttatacaaattttaaatcatatacattaattttaattgacaaatttttgtttatattt 36058766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 527 - 568
Target Start/End: Original strand, 38936314 - 38936355
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatgtc 568  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  38936314 tacacattacggaaaacttctctatagaccacatttgatgtc 38936355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 419
Target Start/End: Complemental strand, 5727794 - 5727723
Alignment:
Q  347 ataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    |||| ||||| ||| ||||||||||||||||| || || |||||||||| ||||| |||||||||||| ||||    
T  5727794 ataagttgatgtatctggtacaaattttaaaccaa-tatattaatttttattgaccaatttttacttacattt 5727723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 419
Target Start/End: Complemental strand, 15119368 - 15119304
Alignment:
Q  355 atatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||  |||||||||| ||  ||||||||||| |||| ||||||||||||| |||||||||    
T  15119368 atatatttaatacaaattttgaatcaaatacattaagttttattgactaatttttgcttatattt 15119304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 17234563 - 17234611
Alignment:
Q  347 ataaattgatatatttggtacaaattttaaacaaaatacattaattttt 395  Q
    ||||||| || |||||| |||||||||||||||||||| ||||||||||    
T  17234563 ataaattaatgtatttgctacaaattttaaacaaaatatattaattttt 17234611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 12655317 - 12655278
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  12655317 tacacattacggaaaacttctctgtagaccacacttgatg 12655278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 20105095 - 20105134
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  20105095 tacacattacggaaaacttctctgtagaccacacttgatg 20105134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 23184102 - 23184063
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  23184102 tacacattacggaaaacttctctgtagaccacacttgatg 23184063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 23188369 - 23188330
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  23188369 tacacattacggaaaacttctctgtagaccacacttgatg 23188330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 30090355 - 30090394
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  30090355 tacacattacggaaaacttctctgtagaccacacttgatg 30090394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 419
Target Start/End: Complemental strand, 33498443 - 33498368
Alignment:
Q  344 aacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||| ||||| ||||| ||||||||||| ||| ||||| ||| |||||||||| | || |||| |||||||||    
T  33498443 aacataagttgatgtattttgtacaaattttgaaccaaatatattgatttttgttggccaacttttgcttatattt 33498368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 34761363 - 34761324
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  34761363 tacacattacggaaaacttctctgtagaccacacttgatg 34761324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 419
Target Start/End: Original strand, 39030627 - 39030666
Alignment:
Q  380 aaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||||| |||||||||||||||||| |||||||||    
T  39030627 aaatacattaacttttgttgactaatttttgcttatattt 39030666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 39878197 - 39878158
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  39878197 tacacattacggaaaacttctctgtagaccacacttgatg 39878158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 419
Target Start/End: Complemental strand, 42708648 - 42708589
Alignment:
Q  360 tttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||| ||||||| ||| ||||||||||| ||||||||| |||||||| | |||||||    
T  42708648 tttggtataaattttcaactaaatacattaacttttgttgattaatttttgcgtatattt 42708589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 419
Target Start/End: Complemental strand, 16500640 - 16500564
Alignment:
Q  343 caacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    |||||||||||||| ||| |||   ||||||| ||| || ||||||||||||||||||  ||||||| |||| ||||    
T  16500640 caacataaattgatgtatctggattaaattttgaaccaattacattaatttttgttgaacaatttttgcttacattt 16500564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 23344955 - 23344907
Alignment:
Q  352 ttgatatatttggtacaaattttaaacaaaatacattaatttttgttga 400  Q
    |||||||| || ||| ||||||| ||| |||||||||||||||||||||    
T  23344955 ttgatatacttagtataaattttgaactaaatacattaatttttgttga 23344907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 332 - 424
Target Start/End: Original strand, 29637449 - 29637541
Alignment:
Q  332 aaaatataagtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatatttaggaa 424  Q
    |||| ||||||||||||||||| ||||||||| |||||||||| ||| ||||||  |||||| ||||||||||||| ||||||||||| ||||    
T  29637449 aaaaaataagtcaacataaattaatatatttgatacaaattttgaaccaaatactgtaatttatgttgactaatttctacttatattttggaa 29637541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 346 - 419
Target Start/End: Original strand, 32221500 - 32221573
Alignment:
Q  346 cataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||||| ||||||||||||||||| ||| ||||||||||| |||||||||||||||||| |||| ||||    
T  32221500 cataaattgatgtatttggtacaaattttgaaccaaatacattaacttttgttgactaatttttgcttacattt 32221573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 342 - 419
Target Start/End: Complemental strand, 31280239 - 31280162
Alignment:
Q  342 tcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    |||||||||||| || ||| ||||||||||||| ||| ||||||||||| |||||||||  |||||||||||||||||    
T  31280239 tcaacataaattaatgtatatggtacaaattttgaaccaaatacattaaattttgttgatcaatttttacttatattt 31280162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 340 - 426
Target Start/End: Complemental strand, 26104304 - 26104218
Alignment:
Q  340 agtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatatttaggaacg 426  Q
    ||||||||||||||||| | |||| |||||||||| ||| |||||||||| |||||||| || |||||||| ||| |||| ||||||    
T  26104304 agtcaacataaattgatttgtttgatacaaattttgaactaaatacattagtttttgttaaccaatttttatttacattttggaacg 26104218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 527 - 568
Target Start/End: Complemental strand, 18256344 - 18256303
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatgtc 568  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  18256344 tacacattatggaaaacttctctgtagaccacatttgatgtc 18256303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 413
Target Start/End: Complemental strand, 3956242 - 3956171
Alignment:
Q  342 tcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttactt 413  Q
    ||||||||| ||  |||||||| | |||||||||||| ||||||||| |||||||||||| |||||||||||    
T  3956242 tcaacataacttactatatttgatccaaattttaaactaaatacatttatttttgttgaccaatttttactt 3956171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 854686 - 854647
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  854686 tacacattacggaaaacttctctgtagaccacatttgatg 854647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 18198814 - 18198775
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  18198814 tacacattacggaaaacttctctgtagaccacatttgatg 18198775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 26951618 - 26951579
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  26951618 tacacattacggaaaacttctctgtagaccacatttgatg 26951579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 36087591 - 36087630
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  36087591 tacacattacggaaaacttctctgtagaccacatttgatg 36087630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 38655924 - 38655963
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  38655924 tacacattacggaaaacttctctgtagaccacatttgatg 38655963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 49562410 - 49562449
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  49562410 tacacattacggaaaacttctctgtagaccacatttgatg 49562449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 530 - 568
Target Start/End: Complemental strand, 36006293 - 36006255
Alignment:
Q  530 acattatggaaaacttctctgtagaccacatttgatgtc 568  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  36006293 acattacggaaaacttctctgtagaccacatttgatgtc 36006255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 424
Target Start/End: Complemental strand, 47783164 - 47783080
Alignment:
Q  340 agtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatatttaggaa 424  Q
    |||||||||||   ||| ||| || |||||||||| ||| ||||||||||| |||| ||||| |||||||||||| |||| ||||    
T  47783164 agtcaacataagccgatgtatctgatacaaattttgaaccaaatacattaactttttttgaccaatttttacttacattttggaa 47783080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 4594223 - 4594184
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  4594223 tacacattacggaaaacttctctgtagaccacacttgatg 4594184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 11826587 - 11826548
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  11826587 tacacattacggaaaacttctttgtagaccacatttgatg 11826548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 16651531 - 16651492
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  16651531 tacacattacggaaaacttctctgtagaccacacttgatg 16651492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 426
Target Start/End: Original strand, 26914476 - 26914559
Alignment:
Q  343 caacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatatttaggaacg 426  Q
    |||| ||| ||||| ||||| ||| ||||||| ||| | |||||||||||||||||||  ||||||| |||| |||| ||||||    
T  26914476 caacttaagttgatgtatttagtataaattttgaaccacatacattaatttttgttgatcaatttttgcttacattttggaacg 26914559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 26947959 - 26947920
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  26947959 tacacattacggaaaacttctctgtagaccacacttgatg 26947920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 36091429 - 36091468
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  36091429 tacacattacggaaaacttctttgtagaccacatttgatg 36091468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 36947158 - 36947197
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  36947158 tacacattacggaaaaattctctgtagaccacatttgatg 36947197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 568
Target Start/End: Original strand, 53521078 - 53521107
Alignment:
Q  539 aaaacttctctgtagaccacatttgatgtc 568  Q
    ||||||||||||||||||||||||||||||    
T  53521078 aaaacttctctgtagaccacatttgatgtc 53521107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 409
Target Start/End: Complemental strand, 5307388 - 5307344
Alignment:
Q  365 tacaaattttaaacaaaatacattaatttttgttgactaattttt 409  Q
    |||||||||||||| |||| ||||||||||| ||||| |||||||    
T  5307388 tacaaattttaaacgaaatccattaatttttattgaccaattttt 5307344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 526 - 566
Target Start/End: Complemental strand, 12260939 - 12260899
Alignment:
Q  526 ttacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    |||||||||| |||||||||||||||||| |||| ||||||    
T  12260939 ttacacattacggaaaacttctctgtagatcacacttgatg 12260899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 538 - 566
Target Start/End: Original strand, 52418807 - 52418835
Alignment:
Q  538 gaaaacttctctgtagaccacatttgatg 566  Q
    |||||||||||||||||||||||||||||    
T  52418807 gaaaacttctctgtagaccacatttgatg 52418835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 340 - 409
Target Start/End: Complemental strand, 37997 - 37928
Alignment:
Q  340 agtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaattttt 409  Q
    |||||| |||||||||| ||||||||| ||||||||||| ||||||||||| ||||||||||||||||||    
T  37997 agtcaatataaattgatgtatttggtataaattttaaaccaaatacattaacttttgttgactaattttt 37928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 49096 - 49135
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  49096 tacacattacggaaaacttctctgtagaccacatttgatg 49135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 40446 - 40485
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  40446 tacacattacggaaaacttctctgtagaccacacttgatg 40485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 51918 - 51957
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  51918 tacacattacggaaaacttctctatagaccacatttgatg 51957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 340 - 419
Target Start/End: Complemental strand, 2884342 - 2884263
Alignment:
Q  340 agtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    |||||| |||| || ||||||||| || ||||||| ||| |||||||||||||||||||||| |||||||||||||||||    
T  2884342 agtcaatataatttaatatatttgatataaattttgaaccaaatacattaatttttgttgacaaatttttacttatattt 2884263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 349 - 419
Target Start/End: Original strand, 44726815 - 44726885
Alignment:
Q  349 aaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||||||||| || ||||||||||| |||||||||||||||||||||  ||||||| |||||||||    
T  44726815 aaattgatatatttgatataaattttaaactaaatacattaatttttgttgatcaattttttcttatattt 44726885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 340 - 419
Target Start/End: Original strand, 38935387 - 38935466
Alignment:
Q  340 agtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||||| ||||| |||||| |||| ||||| ||||||||||||||| ||||||||| ||||||||  ||||||||    
T  38935387 agtcaacataagttgatgtatttgatacagattttgaacaaaatacattaacttttgttgagtaatttttgtttatattt 38935466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 419
Target Start/End: Original strand, 17437168 - 17437229
Alignment:
Q  358 tatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||||||||||| ||| |||||||||||||||||||||| |||||||  ||||||||    
T  17437168 tatttggtacaaattttgaactaaatacattaatttttgttgacaaatttttgtttatattt 17437229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 426
Target Start/End: Complemental strand, 19924389 - 19924304
Alignment:
Q  341 gtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatatttaggaacg 426  Q
    |||||| ||| ||||| ||||||||||||||||| ||| | ||||||||| |||| |||||||| ||||||||| |||| ||||||    
T  19924389 gtcaacgtaagttgatgtatttggtacaaattttgaaccatatacattaacttttattgactaacttttacttacattttggaacg 19924304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 419
Target Start/End: Complemental strand, 944857 - 944778
Alignment:
Q  340 agtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||||| ||||| ||||||||||||||||| ||| ||||||||||| |||| ||||   |||||| |||||||||    
T  944857 agtcaacataagttgatgtatttggtacaaattttgaactaaatacattaacttttattgatcgatttttgcttatattt 944778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 419
Target Start/End: Complemental strand, 7932829 - 7932750
Alignment:
Q  340 agtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||||| ||||| ||| || || ||||||| ||| |||||| |||| |||||||||||||||||| |||||||||    
T  7932829 agtcaacataagttgatgtatctgatataaattttgaaccaaatacgttaacttttgttgactaatttttgcttatattt 7932750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 419
Target Start/End: Original strand, 16180459 - 16180538
Alignment:
Q  340 agtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||||||||||| ||||   || ||||||| ||| ||||||||||| |||||||||| || ||||||||||||||    
T  16180459 agtcaacataaattgatgtattaaatataaattttgaaccaaatacattaacttttgttgaccaaattttacttatattt 16180538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 387
Target Start/End: Original strand, 24037608 - 24037655
Alignment:
Q  340 agtcaacataaattgatatatttggtacaaattttaaacaaaatacat 387  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  24037608 agtcaacataagttgatatatttggtacaaattttgaacaaaatacat 24037655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 341 - 419
Target Start/End: Complemental strand, 10459351 - 10459273
Alignment:
Q  341 gtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    |||||||||| |||||  || || |||||||||| ||| ||||||||||| |||||||||| ||||||| |||||||||    
T  10459351 gtcaacataagttgatgcatctgatacaaattttgaaccaaatacattaacttttgttgaccaatttttgcttatattt 10459273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 419
Target Start/End: Complemental strand, 31469139 - 31469078
Alignment:
Q  358 tatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    |||||| |||||||||| ||| ||||||||||| |||||||||| ||||||| |||||||||    
T  31469139 tatttgatacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttatattt 31469078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 409
Target Start/End: Original strand, 43398863 - 43398931
Alignment:
Q  341 gtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaattttt 409  Q
    ||||| |||| ||||| ||||||||||||||||| ||| ||||||||||| ||||||| || |||||||    
T  43398863 gtcaatataagttgatgtatttggtacaaattttgaaccaaatacattaacttttgttaacaaattttt 43398931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 207845 - 207806
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  207845 tacacattacggaaaacttctctgtagaccacatttgatg 207806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 1512871 - 1512832
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  1512871 tacacattacggaaaacttctctgtagaccacatttgatg 1512832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 26456005 - 26455966
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  26456005 tacacattacggaaaacttctctgtagaccacatttgatg 26455966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 27997492 - 27997531
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  27997492 tacacattacggaaaacttctctgtagaccacatttgatg 27997531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 28098862 - 28098901
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  28098862 tacacattacggaaaacttctctgtagaccacatttgatg 28098901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 380 - 419
Target Start/End: Original strand, 30517918 - 30517957
Alignment:
Q  380 aaatacattaatttttgttgactaatttttacttatattt 419  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  30517918 aaatacattaatttttgttgacaaatttttacttatattt 30517957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 40605467 - 40605428
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  40605467 tacacattacggaaaacttctctgtagaccacatttgatg 40605428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 340 - 419
Target Start/End: Original strand, 40823553 - 40823632
Alignment:
Q  340 agtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||||| ||||| |||||| || ||||||||||| |||||||| ||| | | ||||  |||||||||||||||||    
T  40823553 agtcaacataatttgatgtatttgatataaattttaaaccaaatacataaatgtctcttgatcaatttttacttatattt 40823632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 352 - 419
Target Start/End: Original strand, 41374565 - 41374632
Alignment:
Q  352 ttgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||| ||||||||| ||| ||| ||  ||||||||||| ||| ||||||||||||||||||||||||    
T  41374565 ttgatgtatttggtataaactttgaatcaaatacattaactttcgttgactaatttttacttatattt 41374632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 409
Target Start/End: Original strand, 4445885 - 4445957
Alignment:
Q  337 ataagtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaattttt 409  Q
    |||||| || |||||||||| ||||||||||||||||| ||||||||  ||| | ||||| ||| ||||||||    
T  4445885 ataagttaatataaattgatgtatttggtacaaattttgaacaaaatgtattgacttttgctgattaattttt 4445957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 409
Target Start/End: Original strand, 35311210 - 35311277
Alignment:
Q  341 gtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaattttt 409  Q
    |||||||||| || |||||| | ||||||||||| ||| ||||||||||| ||||||||||||| ||||    
T  35311210 gtcaacataagtt-atatatcttgtacaaattttgaaccaaatacattaacttttgttgactaaatttt 35311277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 409
Target Start/End: Original strand, 41912098 - 41912170
Alignment:
Q  337 ataagtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaattttt 409  Q
    |||||||||||||| || || ||  ||||||||||||| ||| | |||||||||||||||||||  |||||||    
T  41912098 ataagtcaacataagttaatctagctggtacaaattttgaaccagatacattaatttttgttgaacaattttt 41912170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 184231 - 184192
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  184231 tacacattacggaaaacttctctgtagaccacacttgatg 184192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 976085 - 976124
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  976085 tacacattacggaaaacttctctgtagaccacacttgatg 976124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 1916810 - 1916849
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  1916810 tacatattatggaaaacttctatgtagaccacatttgatg 1916849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 2449465 - 2449426
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  2449465 tacacattacggaaaacttctctgtagaccacacttgatg 2449426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 418
Target Start/End: Complemental strand, 4592518 - 4592447
Alignment:
Q  347 ataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatatt 418  Q
    ||||| |||| |||||| ||||||||| |||  |||||||||||||||||||||| | |||||  |||||||    
T  4592518 ataaactgatgtatttgatacaaatttaaaatcaaatacattaatttttgttgacaattttttgtttatatt 4592447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 5013568 - 5013607
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| | ||||||||||||||||||||||||||||    
T  5013568 tacacattacgaaaaacttctctgtagaccacatttgatg 5013607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 409
Target Start/End: Complemental strand, 11386393 - 11386326
Alignment:
Q  342 tcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaattttt 409  Q
    ||||||||| ||||| |||||| |||||||||| ||  ||||| |||||||||||||||  |||||||    
T  11386393 tcaacataagttgatgtatttgatacaaattttgaattaaatatattaatttttgttgatcaattttt 11386326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 20890778 - 20890739
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  20890778 tacacattacggaaaacttctttgtagaccacatttgatg 20890739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 35432177 - 35432215
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  35432177 tacacattatggaaaacttctctgtag-ccacatttgatg 35432215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 409
Target Start/End: Complemental strand, 35693986 - 35693935
Alignment:
Q  358 tatttggtacaaattttaaacaaaatacattaatttttgttgactaattttt 409  Q
    |||||| ||| |||||||||| |||||||||||||||| ||||| |||||||    
T  35693986 tatttgatactaattttaaaccaaatacattaatttttattgaccaattttt 35693935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 36437644 - 36437683
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  36437644 tacacattacggaaaacttctttgtagaccacatttgatg 36437683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 419
Target Start/End: Original strand, 4225002 - 4225080
Alignment:
Q  341 gtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    |||||||||||||||| ||| ||||| ||||||| ||  ||||||  ||| ||||||||||||| ||||  ||||||||    
T  4225002 gtcaacataaattgatgtatctggtataaattttgaatcaaatacgataacttttgttgactaaattttgtttatattt 4225080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Original strand, 18007535 - 18007584
Alignment:
Q  352 ttgatatatttggtacaaattttaaacaaaatacattaatttttgttgac 401  Q
    |||||||||||||||||||||||  || |||||| ||||||||| |||||    
T  18007535 ttgatatatttggtacaaattttggaccaaatacgttaattttttttgac 18007584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 568
Target Start/End: Original strand, 23455696 - 23455737
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatgtc 568  Q
    ||||||||| |||||| |||||||||||| ||||||||||||    
T  23455696 tacacattacggaaaaattctctgtagactacatttgatgtc 23455737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 409
Target Start/End: Original strand, 43465501 - 43465542
Alignment:
Q  368 aaattttaaacaaaatacattaatttttgttgactaattttt 409  Q
    ||||||| ||||||||||||||| ||||||| ||||||||||    
T  43465501 aaattttgaacaaaatacattaacttttgttaactaattttt 43465542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 526 - 566
Target Start/End: Complemental strand, 6123811 - 6123771
Alignment:
Q  526 ttacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    |||||||||| |||||||||||||||||| |||| ||||||    
T  6123811 ttacacattacggaaaacttctctgtagatcacacttgatg 6123771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 419
Target Start/End: Complemental strand, 16564462 - 16564385
Alignment:
Q  340 agtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||||| ||||| ||||||||||||||||| ||| ||  ||| |||  ||||| ||| ||||||| |||||||||    
T  16564462 agtcaacataagttgatgtatttggtacaaattttgaaccaa--acactaacgtttgtagaccaatttttgcttatattt 16564385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 340 - 419
Target Start/End: Original strand, 3694011 - 3694090
Alignment:
Q  340 agtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||||||||||| |||||  |||||||||| ||  |||||||||||||||||||||| ||||| |||||||||||    
T  3694011 agtcaacataaattgatgtatttaatacaaattttgaatcaaatacattaatttttgttgaccaatttctacttatattt 3694090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 352 - 419
Target Start/End: Original strand, 19758307 - 19758374
Alignment:
Q  352 ttgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||| ||||||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||    
T  19758307 ttgatgtatttggtacaaattataaactaaatacattaacttttgttgaccaatttttacttatattt 19758374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 419
Target Start/End: Original strand, 3739856 - 3739917
Alignment:
Q  358 tatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||||||||||| ||| ||||||||||| |||||||||| ||||||| |||||||||    
T  3739856 tatttggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttatattt 3739917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 419
Target Start/End: Complemental strand, 30693419 - 30693342
Alignment:
Q  342 tcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    |||||||||  |||| ||||||||||||||||| ||  |||||||||||||||||||||  |||||||| ||||||||    
T  30693419 tcaacataatatgatgtatttggtacaaattttgaatcaaatacattaatttttgttgatcaatttttatttatattt 30693342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 401
Target Start/End: Original strand, 10498356 - 10498411
Alignment:
Q  346 cataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgac 401  Q
    ||||| |||||||||||| |||||||||||||| ||||| ||||||||||||||||    
T  10498356 cataagttgatatatttgatacaaattttaaactaaatatattaatttttgttgac 10498411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 419
Target Start/End: Original strand, 35310304 - 35310355
Alignment:
Q  368 aaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||||  |||||||||||||||||||||| |||||||||||||||||    
T  35310304 aaattttaaatcaaatacattaatttttgttgaccaatttttacttatattt 35310355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 419
Target Start/End: Complemental strand, 47543673 - 47543606
Alignment:
Q  352 ttgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||| ||||||||||||||||| ||| |||| ||||||||||||||||| |||||||  ||||||||    
T  47543673 ttgatgtatttggtacaaattttgaaccaaattcattaatttttgttgaccaattttttattatattt 47543606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 2045250 - 2045289
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  2045250 tacacattacggaaaacttctctgtagaccacatttgatg 2045289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 340 - 419
Target Start/End: Original strand, 5056318 - 5056397
Alignment:
Q  340 agtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||||| ||||| |||||| |||||||||| ||  |||||| ||||||||| ||||| |||||||  ||||||||    
T  5056318 agtcaacataagttgatgtatttgatacaaattttgaatcaaatacgttaatttttattgaccaatttttgtttatattt 5056397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 45501289 - 45501328
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  45501289 tacacattacggaaaacttctctgtagaccacatttgatg 45501328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 523 - 565
Target Start/End: Complemental strand, 21056916 - 21056874
Alignment:
Q  523 gtgttacacattatggaaaacttctctgtagaccacatttgat 565  Q
    ||||||||||||| |||||||||||||||||| ||||||||||    
T  21056916 gtgttacacattacggaaaacttctctgtagagcacatttgat 21056874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 408
Target Start/End: Original strand, 37918940 - 37919006
Alignment:
Q  342 tcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttt 408  Q
    ||||||||| ||||| |||||| || ||||||||||| ||||||||| | |||||||||| ||||||    
T  37918940 tcaacataagttgatgtatttgatataaattttaaaccaaatacattcacttttgttgacaaatttt 37919006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 7480610 - 7480571
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  7480610 tacacattacggaaaacttctctgtagaccacacttgatg 7480571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 9533986 - 9533947
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  9533986 tacacattacggaaaacttctctgtagaccacacttgatg 9533947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 13926303 - 13926342
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  13926303 tacacattacggaaaacttctttgtagaccacatttgatg 13926342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 29245552 - 29245513
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  29245552 tacacattacggaaaacttctctgtagatcacatttgatg 29245513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 38210995 - 38211034
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  38210995 tacacattacggaaaacttctttgtagaccacatttgatg 38211034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 39513257 - 39513296
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  39513257 tacacattacggaaaacttatctgtagaccacatttgatg 39513296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 42496694 - 42496655
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  42496694 tacacattacggaaaacttctctgtagaccacacttgatg 42496655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 45503534 - 45503573
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  45503534 tacacattacggaaaacttctccgtagaccacatttgatg 45503573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 48651116 - 48651077
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  48651116 tacacattacggaaaacttctctatagaccacatttgatg 48651077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 48960824 - 48960785
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  48960824 tacacattacggaaaacttctttgtagaccacatttgatg 48960785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 49787358 - 49787397
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  49787358 tacacattacggaaaacttctctgtagaccacacttgatg 49787397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 50708973 - 50708934
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  50708973 tacacattacagaaaacttctctgtagaccacatttgatg 50708934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 401
Target Start/End: Original strand, 6061487 - 6061545
Alignment:
Q  343 caacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgac 401  Q
    |||||||| || || ||| | ||||||||||||||  ||||||||||||||||||||||    
T  6061487 caacataagttaatgtatctagtacaaattttaaaacaaatacattaatttttgttgac 6061545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 419
Target Start/End: Complemental strand, 29855126 - 29855065
Alignment:
Q  358 tatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||| ||||||||||| ||| |||||||| || ||||||||| |||||||  |||||||||    
T  29855126 tatttcgtacaaatttttaaccaaatacatcaacttttgttgattaattttcgcttatattt 29855065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 568
Target Start/End: Original strand, 37891536 - 37891577
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatgtc 568  Q
    ||||||||  ||||||||||| ||||||||||||||||||||    
T  37891536 tacacattgcggaaaacttctttgtagaccacatttgatgtc 37891577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 530 - 566
Target Start/End: Complemental strand, 26211749 - 26211713
Alignment:
Q  530 acattatggaaaacttctctgtagaccacatttgatg 566  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  26211749 acattacggaaaacttctttgtagaccacatttgatg 26211713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 404
Target Start/End: Original strand, 38791229 - 38791261
Alignment:
Q  372 tttaaacaaaatacattaatttttgttgactaa 404  Q
    |||| ||||||||||||||||||||||||||||    
T  38791229 tttagacaaaatacattaatttttgttgactaa 38791261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 337 - 407
Target Start/End: Original strand, 32652427 - 32652497
Alignment:
Q  337 ataagtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaattt 407  Q
    |||||||||||||||||| | ||||||||||||| ||| ||| |||||||||||||||| |||| ||||||    
T  32652427 ataagtcaacataaattggtgtatttggtacaaactttgaaccaaatacattaatttttattgagtaattt 32652497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 419
Target Start/End: Complemental strand, 6803375 - 6803314
Alignment:
Q  358 tatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| || |||| |||||||||    
T  6803375 tatttggtacaaattttaaactaaatacattaacttttgttgaccaaattttgcttatattt 6803314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 337 - 419
Target Start/End: Original strand, 23971206 - 23971287
Alignment:
Q  337 ataagtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    |||| |||| |||| ||||| ||||||||||||||||| ||| ||||| ||| |||||||||||| ||||||| |||||||||    
T  23971206 ataaatcaatataagttgatgtatttggtacaaattttgaactaaatatatttatttttgttgaccaattttt-cttatattt 23971287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 419
Target Start/End: Complemental strand, 30794525 - 30794448
Alignment:
Q  342 tcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    |||||||||||  || ||||||||||||||||| ||  ||||| ||||| |||||||||| || ||||||||||||||    
T  30794525 tcaacataaatgaatgtatttggtacaaattttgaatcaaatatattaaattttgttgaccaaattttacttatattt 30794448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 7893854 - 7893815
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  7893854 tacacattacggaaaacttctctgtagaccacatttgatg 7893815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 342 - 409
Target Start/End: Original strand, 18732016 - 18732083
Alignment:
Q  342 tcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaattttt 409  Q
    ||||||||||||||| ||| ||||| ||||||| ||| ||||||||||| |||| ||||| |||||||    
T  18732016 tcaacataaattgatgtatctggtataaattttgaaccaaatacattaacttttattgaccaattttt 18732083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 22007077 - 22007038
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  22007077 tacacattacggaaaacttctctgtagaccacatttgatg 22007038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 26168941 - 26168902
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  26168941 tacacattacggaaaacttctctgtagaccacatttgatg 26168902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 380 - 419
Target Start/End: Complemental strand, 27147643 - 27147604
Alignment:
Q  380 aaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  27147643 aaatacattaacttttgttgactaatttttacttatattt 27147604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 29956574 - 29956535
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  29956574 tacacattacggaaaacttctctgtagaccacatttgatg 29956535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 32038540 - 32038501
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  32038540 tacacattacggaaaacttctctgtagaccacatttgatg 32038501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 32660321 - 32660282
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  32660321 tacacattacggaaaacttctctgtagaccacatttgatg 32660282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 46909445 - 46909406
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  46909445 tacacattatggaaaacttctatgtagaccacatttgatg 46909406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 342 - 401
Target Start/End: Complemental strand, 47967997 - 47967938
Alignment:
Q  342 tcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgac 401  Q
    ||||||||| || || ||||| ||||||||||||||| |||||||| |||||||||||||    
T  47967997 tcaacataagttaatgtatttagtacaaattttaaactaaatacataaatttttgttgac 47967938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 416
Target Start/End: Original strand, 16866443 - 16866501
Alignment:
Q  358 tatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttata 416  Q
    |||| |||||||||||| ||| ||||||||||| |||||||||| ||||||| ||||||    
T  16866443 tattaggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttata 16866501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 44816546 - 44816484
Alignment:
Q  347 ataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaattttt 409  Q
    ||||| |||| ||||||||||||||||| ||| ||||||||||| |||||||| | |||||||    
T  44816546 ataaactgatgtatttggtacaaattttgaaccaaatacattaacttttgttggccaattttt 44816484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 346 - 419
Target Start/End: Complemental strand, 5026220 - 5026147
Alignment:
Q  346 cataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||| ||||| |||||||||||||||||  || ||||| ||||| ||||||| || ||||||| |||||||||    
T  5026220 cataagttgatgtatttggtacaaattttggactaaatatattaacttttgttaaccaatttttgcttatattt 5026147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 419
Target Start/End: Original strand, 1554871 - 1554938
Alignment:
Q  352 ttgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||| | |||||||||||||||||||||| | || |||| ||||| |||||||  ||||||||    
T  1554871 ttgatatatctagtacaaattttaaacaaaatacgtgaacttttattgaccaatttttgtttatattt 1554938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 419
Target Start/End: Original strand, 3769777 - 3769856
Alignment:
Q  340 agtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    |||||||| || ||||| |||||  |||||||||||||| ||||||||||| ||||||  |  |||||||| ||||||||    
T  3769777 agtcaacacaagttgatgtatttaatacaaattttaaactaaatacattaacttttgtatatcaatttttatttatattt 3769856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 7888964 - 7888925
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  7888964 tacacattacggaaaacttctctgtagaccacacttgatg 7888925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 13398415 - 13398454
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  13398415 tacacattacggaaaacttctttgtagaccacatttgatg 13398454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 45115927 - 45115888
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  45115927 tacacattacggaaaacttctctatagaccacatttgatg 45115888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 526 - 566
Target Start/End: Complemental strand, 16719998 - 16719958
Alignment:
Q  526 ttacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    |||||||||| |||||||||||||||||| |||| ||||||    
T  16719998 ttacacattacggaaaacttctctgtagatcacacttgatg 16719958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 527 - 563
Target Start/End: Complemental strand, 31100235 - 31100199
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttg 563  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  31100235 tacacattacggaaaacttatctgtagaccacatttg 31100199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2113 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold2113
Description:

Target: scaffold2113; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 419
Target Start/End: Original strand, 618 - 679
Alignment:
Q  358 tatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||||||||||| ||| ||||||| ||| ||||||||||||||||| ||||||||||    
T  618 tatttggtacaaattttgaactaaatacaataacttttgttgactaattttcacttatattt 679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 416
Target Start/End: Complemental strand, 24788715 - 24788646
Alignment:
Q  347 ataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttata 416  Q
    |||| ||||| |||||| ||||||||| |||  ||||||||||||||||||||| |||||||||||||||    
T  24788715 ataagttgatgtatttgatacaaatttcaaattaaatacattaatttttgttgattaatttttacttata 24788646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 416
Target Start/End: Original strand, 24819545 - 24819614
Alignment:
Q  347 ataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttata 416  Q
    |||| ||||| |||||| ||||||||| |||  ||||||||||||||||||||| |||||||||||||||    
T  24819545 ataagttgatgtatttgatacaaatttcaaattaaatacattaatttttgttgattaatttttacttata 24819614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 340 - 420
Target Start/End: Original strand, 54235246 - 54235326
Alignment:
Q  340 agtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattta 420  Q
    |||||| |||||||||| ||||| ||||||||||| ||| ||||||||||| |||||||||  |||||||  |||||||||    
T  54235246 agtcaatataaattgatgtatttagtacaaattttgaaccaaatacattaacttttgttgagcaatttttgtttatattta 54235326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 419
Target Start/End: Original strand, 30848640 - 30848695
Alignment:
Q  364 gtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||| |||| ||||    
T  30848640 gtacaaattttgaacaaaatacattaatttttgttgaccaatttttgcttacattt 30848695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 419
Target Start/End: Original strand, 24980651 - 24980728
Alignment:
Q  342 tcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||| ||||| ||| ||  |||||||||  ||||||||||||||||||||||||| ||||||| |||| ||||    
T  24980651 tcaacataagttgatgtatctgacacaaattttgtacaaaatacattaatttttgttgacaaatttttgcttacattt 24980728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 527 - 568
Target Start/End: Original strand, 26602412 - 26602453
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatgtc 568  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  26602412 tacacattatagaaaacttctctgtagaccacatttgatgtc 26602453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 380 - 419
Target Start/End: Complemental strand, 2734225 - 2734186
Alignment:
Q  380 aaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  2734225 aaatacattaacttttgttgactaatttttacttatattt 2734186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 16909154 - 16909115
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  16909154 tacacattacggaaaacttctctgtagaccacatttgatg 16909115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 30388031 - 30388070
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  30388031 tacacattacggaaaacttctctgtagaccacatttgatg 30388070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 52682831 - 52682792
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  52682831 tacacattacggaaaacttctctgtagaccacatttgatg 52682792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 419
Target Start/End: Complemental strand, 12276905 - 12276827
Alignment:
Q  341 gtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    |||||||||| ||||| ||||| ||| ||||||| ||  ||||||||||| ||||| |||| ||| |||||||||||||    
T  12276905 gtcaacataagttgatgtatttagtataaattttgaatcaaatacattaacttttgctgaccaatctttacttatattt 12276827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 528 - 566
Target Start/End: Complemental strand, 28389500 - 28389462
Alignment:
Q  528 acacattatggaaaacttctctgtagaccacatttgatg 566  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  28389500 acacattacggaaaacttctctgtagaccacatttgatg 28389462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 530 - 568
Target Start/End: Original strand, 36895658 - 36895696
Alignment:
Q  530 acattatggaaaacttctctgtagaccacatttgatgtc 568  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  36895658 acattacggaaaacttctctgtagaccacatttgatgtc 36895696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 342 - 419
Target Start/End: Complemental strand, 4423233 - 4423156
Alignment:
Q  342 tcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    |||| |||| ||||| ||||||||||||||||| ||  ||||| |||||||||| ||||  |||||| ||||||||||    
T  4423233 tcaatataagttgatgtatttggtacaaattttgaatcaaatatattaatttttattgatcaattttcacttatattt 4423156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 527 - 568
Target Start/End: Complemental strand, 8121155 - 8121114
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatgtc 568  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  8121155 tacacattacggaaaacttctctgtagaccatatttgatgtc 8121114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 419
Target Start/End: Original strand, 33759429 - 33759480
Alignment:
Q  367 caaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    |||||||| ||| |||||||||||||||||||||| || ||||||||||||||    
T  33759429 caaattttgaactaaatacattaatttttgttgaccaa-ttttacttatattt 33759480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 416
Target Start/End: Complemental strand, 3249758 - 3249695
Alignment:
Q  353 tgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttata 416  Q
    |||| ||| ||||| ||||||| ||| ||||||||||| |||||| ||| ||||||||||||||    
T  3249758 tgatgtatctggtataaattttgaaccaaatacattaacttttgtcgaccaatttttacttata 3249695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 391
Target Start/End: Original strand, 5496875 - 5496926
Alignment:
Q  340 agtcaacataaattgatatatttggtacaaattttaaacaaaatacattaat 391  Q
    |||||| |||| ||||| ||||||||||||||||| ||| ||||||||||||    
T  5496875 agtcaatataagttgatttatttggtacaaattttgaaccaaatacattaat 5496926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 21382748 - 21382709
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  21382748 tacacattacggaaaacttctctatagaccacatttgatg 21382709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 29359215 - 29359254
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  29359215 tacacattacggaaaacttctttgtagaccacatttgatg 29359254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 31448460 - 31448499
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  31448460 tacacattacggaaaacttctttgtagaccacatttgatg 31448499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 42347837 - 42347798
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  42347837 tacacattacggaaaacttctttgtagaccacatttgatg 42347798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 399
Target Start/End: Complemental strand, 43095319 - 43095258
Alignment:
Q  338 taagtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttg 399  Q
    |||||||||| ||||| || ||| |||| |||||||| ||| | ||||||||||||||||||    
T  43095319 taagtcaacaaaaattaatgtatctggtccaaattttgaaccatatacattaatttttgttg 43095258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 526 - 566
Target Start/End: Original strand, 41859873 - 41859913
Alignment:
Q  526 ttacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    |||||||||| | |||||||| |||||||||||||||||||    
T  41859873 ttacacattacgaaaaacttcactgtagaccacatttgatg 41859913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 393
Target Start/End: Complemental strand, 43541934 - 43541890
Alignment:
Q  349 aaattgatatatttggtacaaattttaaacaaaatacattaattt 393  Q
    |||||||| |||||||| |||||||||||| |||||||| |||||    
T  43541934 aaattgatgtatttggtccaaattttaaacgaaatacatcaattt 43541890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 400
Target Start/End: Complemental strand, 95031 - 94972
Alignment:
Q  341 gtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttga 400  Q
    |||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||| ||||    
T  95031 gtcaacataagttgatgtatttggtacaaattttgaacataatacattaatttttattga 94972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 341 - 419
Target Start/End: Original strand, 7974811 - 7974889
Alignment:
Q  341 gtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    |||||||||||||||  ||||||||||||||||| |  |||||||||||| |||| ||||| |||||||  ||||||||    
T  7974811 gtcaacataaattgacgtatttggtacaaattttgacaaaaatacattaacttttattgaccaatttttgtttatattt 7974889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 342 - 400
Target Start/End: Complemental strand, 11114320 - 11114262
Alignment:
Q  342 tcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttga 400  Q
    ||||||||| ||||| ||||||||| |||||||||||  ||||||||||||||||||||    
T  11114320 tcaacataagttgatgtatttggtataaattttaaactgaatacattaatttttgttga 11114262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 340 - 419
Target Start/End: Original strand, 9548073 - 9548152
Alignment:
Q  340 agtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||||| ||||| ||||| ||||||||||| ||| ||||| | |||||||||||||  |||||||  ||||||||    
T  9548073 agtcaacataagttgatgtatttagtacaaattttgaaccaaatataataatttttgttgaacaatttttgtttatattt 9548152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 23827857 - 23827818
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  23827857 tacacattacggaaaacttctctgtagaccacatttgatg 23827818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 414
Target Start/End: Complemental strand, 15114699 - 15114629
Alignment:
Q  344 aacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttactta 414  Q
    ||||||||||||  ||||| | ||||||||| ||  |||||||||||||||||||||| ||||||| ||||    
T  15114699 aacataaattgacgtatttagaacaaattttgaatcaaatacattaatttttgttgaccaattttttctta 15114629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 342 - 415
Target Start/End: Original strand, 33557801 - 33557874
Alignment:
Q  342 tcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttat 415  Q
    ||||||||| || || |||||| |||||||||| ||| ||||||||||| |||| ||||  |||||||||||||    
T  33557801 tcaacataagtttatgtatttgatacaaattttgaactaaatacattaacttttattgatcaatttttacttat 33557874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 409
Target Start/End: Complemental strand, 13210049 - 13209981
Alignment:
Q  341 gtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaattttt 409  Q
    |||||||||| ||||| ||| || |||||||||| ||| ||||||||||| |||||||||  |||||||    
T  13210049 gtcaacataagttgatgtatctgatacaaattttgaaccaaatacattaacttttgttgatcaattttt 13209981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 526 - 566
Target Start/End: Original strand, 24011856 - 24011896
Alignment:
Q  526 ttacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  24011856 ttacacattacggaaaacttctttgtagaccacatttgatg 24011896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 407
Target Start/End: Original strand, 29797968 - 29798034
Alignment:
Q  344 aacataaattgatatatttggtacaaattttaaacaaa---atacattaatttttgttgactaattt 407  Q
    |||||||||| || ||||||||||||||||| ||| ||   |||||||||||||||||||| |||||    
T  29797968 aacataaatttatgtatttggtacaaattttgaaccaacaaatacattaatttttgttgaccaattt 29798034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 14994481 - 14994520
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  14994481 tacacattacggaaaacttctctgtagaccatatttgatg 14994520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 19961726 - 19961687
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  19961726 tacacattacagaaaacttctctgtagaccacatttgatg 19961687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 419
Target Start/End: Original strand, 35901059 - 35901138
Alignment:
Q  340 agtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||||| ||||| || || ||||||||||| | |  |||||||||| ||||||||||  |||||| |||||||||    
T  35901059 agtcaacataagttgatgtaattagtacaaattttgagcccaatacattaacttttgttgacctatttttgcttatattt 35901138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Original strand, 37983448 - 37983487
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  37983448 tacacattacggaaaacttctttgtagaccacatttgatg 37983487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 419
Target Start/End: Original strand, 44080739 - 44080778
Alignment:
Q  380 aaatacattaatttttgttgactaatttttacttatattt 419  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  44080739 aaatacattaatttttgttgatcaatttttacttatattt 44080778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 527 - 565
Target Start/End: Complemental strand, 18492398 - 18492360
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgat 565  Q
    ||||||||| ||||||||||| |||||||||||||||||    
T  18492398 tacacattacggaaaacttctttgtagaccacatttgat 18492360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 527 - 559
Target Start/End: Original strand, 18266003 - 18266035
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccaca 559  Q
    ||||||||| |||||||||||||||||||||||    
T  18266003 tacacattacggaaaacttctctgtagaccaca 18266035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 527 - 559
Target Start/End: Original strand, 18275016 - 18275048
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccaca 559  Q
    ||||||||| |||||||||||||||||||||||    
T  18275016 tacacattacggaaaacttctctgtagaccaca 18275048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0374 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0374
Description:

Target: scaffold0374; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 2068 - 2029
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  2068 tacacattacggaaaacttctctgtagaccacatttgatg 2029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 45674 - 45635
Alignment:
Q  527 tacacattatggaaaacttctctgtagaccacatttgatg 566  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  45674 tacacattacggaaaacttctctgtagaccacatttgatg 45635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 395
Target Start/End: Original strand, 51246 - 51300
Alignment:
Q  341 gtcaacataaattgatatatttggtacaaattttaaacaaaatacattaattttt 395  Q
    |||||||||| ||||| ||||||||| ||||||| ||| ||||||||||||||||    
T  51246 gtcaacataagttgatgtatttggtataaattttgaactaaatacattaattttt 51300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 419
Target Start/End: Complemental strand, 36026 - 35947
Alignment:
Q  340 agtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    |||||| |||||||||| |||||| ||||||||||  || |||||||||||   |||||||  |||||||| ||||||||    
T  36026 agtcaatataaattgatgtatttgatacaaattttgtaccaaatacattaacggttgttgatcaatttttatttatattt 35947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 419
Target Start/End: Original strand, 20387 - 20465
Alignment:
Q  341 gtcaacataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||||||| || |||||  |||||||||||||| | |||| |||||||||  |||| ||||||| |||| ||||    
T  20387 gtcaacataaattaatgtatttaatacaaattttaaaccacatacgttaatttttactgaccaatttttgcttacattt 20465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 400
Target Start/End: Complemental strand, 13253 - 13200
Alignment:
Q  347 ataaattgatatatttggtacaaattttaaacaaaatacattaatttttgttga 400  Q
    |||| ||||| ||| | ||||||||||||||| ||||||||||| |||||||||    
T  13253 ataagttgatgtatcttgtacaaattttaaaccaaatacattaacttttgttga 13200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 419
Target Start/End: Complemental strand, 28234 - 28174
Alignment:
Q  359 atttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 419  Q
    ||||||||| |||||| ||| ||||||||||| ||||||| |  |||||||| ||||||||    
T  28234 atttggtacgaattttgaaccaaatacattaacttttgttaatcaatttttatttatattt 28174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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