View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8769_low_2 (Length: 374)
Name: NF8769_low_2
Description: NF8769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8769_low_2 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 173 - 374
Target Start/End: Original strand, 31036771 - 31036980
Alignment:
| Q |
173 |
tagtcagatattttgtatcctcgtgttggagcaatagtagcatctcaaataatttgggaccatgactcatcgaatgcactggatggc-aaggcgttggtg |
271 |
Q |
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| T |
31036771 |
tagtcagaaattttgtattctcacgttggagcaatagtagcatctcaaacaatttgggaccaggactcatcaaatgcgctggatggcaaaggcgttggcg |
31036870 |
T |
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| Q |
272 |
tatggtctaatg-------gcgggccagtgaagggaaaggatcgtatatagagaaggttgtatcgtgtaaaagtatatagcgaagttgagacaaagttgg |
364 |
Q |
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| T |
31036871 |
tatggtctaatggagggccgagggccagtgaatggaaaaaatcgtatacagagaaggttgtatcgtgtaaaagtatatagagaagctgagacaaagttgg |
31036970 |
T |
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| Q |
365 |
attatgtgac |
374 |
Q |
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| T |
31036971 |
attatttgac |
31036980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 31036521 - 31036641
Alignment:
| Q |
1 |
agtactttttaaatctccaactgtcatatgtgatagctttcgcaaaaagtatgaaatcattctgaacttggcaacaatttgcaaattgacggcattcatt |
100 |
Q |
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| T |
31036521 |
agtactatttaaatctccaactgtcgtatgtgatagcttttgcaaaaaataattgatcaatttgaacttggcaacaatttgcaaaatgacggcattcatt |
31036620 |
T |
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| Q |
101 |
taacatacaatataccagctt |
121 |
Q |
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| T |
31036621 |
taacatacaatataacagctt |
31036641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 31036687 - 31036743
Alignment:
| Q |
120 |
tttgtatcctcaaaattacaaagttacttcttataaattctcccacaagataatagt |
176 |
Q |
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| T |
31036687 |
tttgtattctcaaaattacaaagttacttcttataaattcttccacaagataatagt |
31036743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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