View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8769_low_5 (Length: 257)
Name: NF8769_low_5
Description: NF8769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8769_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 36248427 - 36248672
Alignment:
| Q |
1 |
aggtaagtgttacatcacatcatccaagattgcttacttcgataggatagagtgttttgtggtgnnnnnnnagtgtttttgtgggctgttactgtcggtt |
100 |
Q |
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| T |
36248427 |
aggtaaatgttacatcacatcatcaaatattgcttacttggataggatagggtgttttgtggtgtttttttgttgtttttgcgggctgttactctcggtt |
36248526 |
T |
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| Q |
101 |
cagggatgcttctgttttgcgcccaattttagtgtttttaagcataattctgtgcctgtagcagctgctgctggccgctgttttagctggcttgggtagt |
200 |
Q |
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| T |
36248527 |
cagggatgcttttattttgcgcccaattttagtgtttttaagcataattttgtgcatgtagcagctgctgctggccgctgtttcagctggcttgggcagt |
36248626 |
T |
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| Q |
201 |
aggtggttttgtggtgctgtctagttttggtcgtgtagtgatgtcc |
246 |
Q |
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| T |
36248627 |
aggtggttttgtggtgctgtctagttttggtcgtgtagtgttgtcc |
36248672 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 7707967 - 7707913
Alignment:
| Q |
192 |
ttgggtagtaggtggttttgtggtgctgtctagttttggtcgtgtagtgatgtcc |
246 |
Q |
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| T |
7707967 |
ttgggcagtaggtggttttatggtgctgtctagttttggtcgtgtagtgttgtcc |
7707913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 231
Target Start/End: Original strand, 12694658 - 12694815
Alignment:
| Q |
73 |
gtgtttttgtgggctgttactgtcggttcagggatgcttctgttttgcgcccaattttagtgtttttaagcataattctgtgcctgtagcagctgctgct |
172 |
Q |
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| T |
12694658 |
gtgtgtttgggggatgttactgtcggatgtgggctgctgctggtttgcgctcagtttgtgtgtttttaggcagtattctgtgtctgtagcagctgctgat |
12694757 |
T |
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| Q |
173 |
ggccgctgttttagctggcttgggtagtaggtggttt-tgtggtgctgtctagttttggt |
231 |
Q |
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| T |
12694758 |
gagcgctg--ctagctggcctgggcagtaggtgttttatatggtgctgtcttgttttggt |
12694815 |
T |
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