View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8769_low_6 (Length: 245)

Name: NF8769_low_6
Description: NF8769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8769_low_6
NF8769_low_6
[»] chr3 (2 HSPs)
chr3 (1-236)||(19607239-19607474)
chr3 (1-95)||(4576664-4576755)
[»] chr1 (1 HSPs)
chr1 (1-219)||(32604599-32604814)
[»] chr2 (3 HSPs)
chr2 (1-219)||(21022964-21023179)
chr2 (1-95)||(7230748-7230839)
chr2 (1-95)||(7230422-7230513)
[»] chr8 (3 HSPs)
chr8 (1-219)||(18176400-18176615)
chr8 (1-219)||(24956496-24956711)
chr8 (1-95)||(29564540-29564631)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-95)||(175954-176045)
[»] chr4 (2 HSPs)
chr4 (1-95)||(14641247-14641338)
chr4 (1-95)||(26110691-26110782)
[»] scaffold0020 (1 HSPs)
scaffold0020 (1-95)||(131180-131271)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 19607239 - 19607474
Alignment:
Q  1 caaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttactttttggg 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19607239 caaatgtgtttctcatagttgttgtcgtcccaacctttgcctttccctttgtcactttctctcaattaatatctggtgaaacctttctttactttttggg 19607338  T
Q  101 tttagtattttccagagggataaattggtcaccaatatcaaattcactatcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgcca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19607339 tttagtattttccagagggataaattggtcaccaatatcaaattcactatcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgcca 19607438  T
Q  201 ttaaattcaaatggcacacttaaagttgatgtccat 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  19607439 ttaaattcaaatggcacacttaaagttgatgtccat 19607474  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 4576664 - 4576755
Alignment:
Q  1 caaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttacttt 95  Q
    |||||||| |||||||||||||||| |||||| ||||||  || |||||||| |||||| | ||    |||||||||||||| ||||||| ||||    
T  4576664 caaatgtgattctcatagttgttgtagtcccagcctttgtcttaccctttgtaactttcacacc---catatctggtgaaacatttcttttcttt 4576755  T

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Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 32604814 - 32604599
Alignment:
Q  1 caaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttactttttggg 100  Q
    ||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||   |||| ||||||||||||||||| |||||||||    
T  32604814 caaatgtttttctcatagttgttgttgtcccaacctttgcctttccctttgtcactttctctcca---atatttggtgaaacctttcttttctttttggg 32604718  T
Q  101 tttagtattttccagagggataaattggtcaccaatatcaaattcactatcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgcca 200  Q
    || ||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32604717 ttgagtattttccacagggctaaagtggtcaccaatatcaaattcactatcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgcca 32604618  T
Q  201 ttaaattcaaatggcacac 219  Q
    ||| |||| ||||||||||    
T  32604617 ttagattctaatggcacac 32604599  T

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Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 21022964 - 21023179
Alignment:
Q  1 caaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttactttttggg 100  Q
    ||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||   |||| ||||||||||||||||| |||||||||    
T  21022964 caaatgtttttctcatagttgttgttgtcccaacctttgcctttccctttgtcactttctctcca---atatttggtgaaacctttcttttctttttggg 21023060  T
Q  101 tttagtattttccagagggataaattggtcaccaatatcaaattcactatcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgcca 200  Q
    || ||||| ||||| |||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21023061 ttgagtatattccatagggctaaagtggtcaccaatattaaattcactatcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgcca 21023160  T
Q  201 ttaaattcaaatggcacac 219  Q
    ||| |||| ||||||||||    
T  21023161 ttagattctaatggcacac 21023179  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 7230839 - 7230748
Alignment:
Q  1 caaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttacttt 95  Q
    ||||||||||||||||||||||||  ||||||||||| |  || |||||||| |||||||| ||    |||||||||||||||||||||| ||||    
T  7230839 caaatgtgtttctcatagttgttgcagtcccaaccttggtcttaccctttgtaactttctcacc---catatctggtgaaacctttcttttcttt 7230748  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 7230513 - 7230422
Alignment:
Q  1 caaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttacttt 95  Q
    ||||||||||||||||||||||||  ||||||||||| |  || |||||||| |||||||| ||    |||||||||||||||||| ||| ||||    
T  7230513 caaatgtgtttctcatagttgttgcagtcccaaccttggtcttaccctttgtaactttctcacc---catatctggtgaaaccttttttttcttt 7230422  T

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Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 18176400 - 18176615
Alignment:
Q  1 caaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttactttttggg 100  Q
    |||||||  |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||   ||| |||||||||| ||||||| |||||||||    
T  18176400 caaatgttcttctcatagttgttgttgtcccaacctttgcctttccctttgtcactttctctcca---atagctggtgaaacttttcttttctttttggg 18176496  T
Q  101 tttagtattttccagagggataaattggtcaccaatatcaaattcactatcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgcca 200  Q
    || ||||||||||| |||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  18176497 ttgagtattttccatagggctaaagtggtcaccaatatcaaattcactatcatcggagtcaattatttcttgtggcacatctgtagtagtatttttgcca 18176596  T
Q  201 ttaaattcaaatggcacac 219  Q
     || | |||||||||||||    
T  18176597 ctacaatcaaatggcacac 18176615  T

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Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 24956711 - 24956496
Alignment:
Q  1 caaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttactttttggg 100  Q
    ||||||| ||||||||| ||||||  |||||||||||||| |||||||||||||||||| |||||   |||| ||||||||||||||||| |||||||||    
T  24956711 caaatgtttttctcataattgttgaagtcccaacctttgcctttccctttgtcactttcactcca---atatatggtgaaacctttcttttctttttggg 24956615  T
Q  101 tttagtattttccagagggataaattggtcaccaatatcaaattcactatcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgcca 200  Q
    || ||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  24956614 ttgagtattttccacagggctaaagtggtcaccaatatcaaattcactatcatcagagtcaattatttcttgtggcacatctgtagtagtatttttgtca 24956515  T
Q  201 ttaaattcaaatggcacac 219  Q
     || |||||||||| ||||    
T  24956514 ctagattcaaatggtacac 24956496  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 29564631 - 29564540
Alignment:
Q  1 caaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttacttt 95  Q
    |||||||||||||||| |||||||  |||||||||||    || |||||||| |||||||| ||    |||||||||||||||||||||| ||||    
T  29564631 caaatgtgtttctcattgttgttgcagtcccaaccttgttcttaccctttgtaactttctcacc---catatctggtgaaacctttcttttcttt 29564540  T

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Target: scaffold0005 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 175954 - 176045
Alignment:
Q  1 caaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttacttt 95  Q
    ||||||||||||||||||||||||  ||||||||||| |  || |||||||| |||||||| ||    |||||||||||||||||||||| ||||    
T  175954 caaatgtgtttctcatagttgttgcagtcccaaccttggtcttaccctttgtaactttctcacc---catatctggtgaaacctttcttttcttt 176045  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 14641338 - 14641247
Alignment:
Q  1 caaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttacttt 95  Q
    ||||||||||||||||||||||||  ||||||||||| |  || |||||||| |||||||| ||    |||||||||||||||||||||| ||||    
T  14641338 caaatgtgtttctcatagttgttgcagtcccaaccttggtcttaccctttgtaactttctcacc---catatctggtgaaacctttcttttcttt 14641247  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 26110782 - 26110691
Alignment:
Q  1 caaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttacttt 95  Q
    |||||||||||||||| |||||||  |||||||||||    || |||||||| |||||||| ||    |||||||||||||||||||||| ||||    
T  26110782 caaatgtgtttctcatcgttgttgcagtcccaaccttgatcttaccctttgtaactttctcacc---catatctggtgaaacctttcttttcttt 26110691  T

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Target: scaffold0020 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 131271 - 131180
Alignment:
Q  1 caaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttacttt 95  Q
    ||||||||||||||||||||||||  ||||||||||| |  || | |||||| |||||||| ||    |||||||||||||||||||||| ||||    
T  131271 caaatgtgtttctcatagttgttgcagtcccaaccttggtcttacactttgtaactttctcacc---catatctggtgaaacctttcttttcttt 131180  T

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