View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8769_low_8 (Length: 224)
Name: NF8769_low_8
Description: NF8769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8769_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 52625777 - 52625977
Alignment:
| Q |
19 |
attaacaaacatgtagtttgatgattattgatttcccatataatggaaagcaatttcctctagaattttgcggtactatgaatctaagggcattttagaa |
118 |
Q |
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| T |
52625777 |
attaacaaacatgtagtttgatgaatattgatttcccatataatggaaagcaatttcctctagaattttgcggtactatgaatctaagggcattttagaa |
52625876 |
T |
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| Q |
119 |
aaggaaaattatgggttgacatccnnnnnnnacc-----------ataccacttcaaacgacattttttatttatatttctcttcccttttatcaattca |
207 |
Q |
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|||||||||||||||||||||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52625877 |
aaggaaaattatgggttgacatcctttttttaccataccactcatataccactccaaatgacattttttatttatatttctcttcccttttatcaattca |
52625976 |
T |
|
| Q |
208 |
t |
208 |
Q |
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| |
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| T |
52625977 |
t |
52625977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 33036525 - 33036487
Alignment:
| Q |
167 |
gacattttttatttatatttctcttcccttttatcaatt |
205 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
33036525 |
gacaatttttatttatatttctcttcccttttatcaatt |
33036487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 41067362 - 41067306
Alignment:
| Q |
151 |
ccataccacttcaaacgacattttttatttatatttctcttcccttttatcaattca |
207 |
Q |
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| T |
41067362 |
ccataccacttcaaatgacattttttattaatatttcttttctcttttatcaattca |
41067306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 2464054 - 2464017
Alignment:
| Q |
171 |
ttttttatttatatttctcttcccttttatcaattcat |
208 |
Q |
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| T |
2464054 |
ttttttattcatatttctcttcccttttatcaattcat |
2464017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 31811191 - 31811246
Alignment:
| Q |
153 |
ataccacttcaaacgacattttttatttatatttctcttcccttttatcaattcat |
208 |
Q |
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|||||| | |||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31811191 |
ataccaatccaaatgacattttttatttatatttcttttcccttttatcaattcat |
31811246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 6244938 - 6244986
Alignment:
| Q |
157 |
cacttcaaacgacattttttatttatatttctcttcccttttatcaatt |
205 |
Q |
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||||||||| || |||||||||| ||||||||||||||||||||||||| |
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| T |
6244938 |
cacttcaaatgatattttttattcatatttctcttcccttttatcaatt |
6244986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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