View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8770_high_10 (Length: 328)
Name: NF8770_high_10
Description: NF8770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8770_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 9574841 - 9575077
Alignment:
| Q |
18 |
atgtgtgctcaataacttcctctgcatatttattttgagaaagaaaaataactggacggg--tgatgacttcacgaaaaattcaaagttaagcttagaca |
115 |
Q |
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| T |
9574841 |
atgtgtgctcaataacttcctctgcatatttattttgagaaagaaaaataactggacgggcctcaatccttcatggaaaattcaaagttaagcttagaca |
9574940 |
T |
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| Q |
116 |
taatcaattcataaagagagtcagaagaagcggcaagaataatggcatccacatacaaaagaatatagacgatgtcattgccatgttgataaataaataa |
215 |
Q |
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| T |
9574941 |
taatcaattcataaagatagtcagaagaagcggcaagaatgatgtcatccacatacaaaagaatatagacggtgtcattgccatgttgataaataaataa |
9575040 |
T |
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| Q |
216 |
agagtggtcaaaataatttgagagaatcccattgtgg |
252 |
Q |
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| T |
9575041 |
agagtggtcaaaataatttaagagaatcccattgtgg |
9575077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 249 - 316
Target Start/End: Original strand, 9575109 - 9575176
Alignment:
| Q |
249 |
gtggggtgcttgtataagtccatggagagaattttttagaagacagacatggccagggagttgagtat |
316 |
Q |
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| T |
9575109 |
gtggggtgcttgtataagtccatggagagaattttttagaagacatacatggccagggagttgagtat |
9575176 |
T |
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