View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8770_high_12 (Length: 312)

Name: NF8770_high_12
Description: NF8770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8770_high_12
NF8770_high_12
[»] chr5 (1 HSPs)
chr5 (1-296)||(40256129-40256426)


Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 40256426 - 40256129
Alignment:
Q  1 aatagtatttgtatgaatgaattgaaaaggatagtattgttgcaggtacgaatatgattttatccaaatgatattggagagggccaaaaacattaaaact 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40256426 aatagtatttgtatgaatgaattgaaaaggatagtatttttgcaggtacgaatatgattttatccaaatgatattggagagggccaaaaacattaaaact 40256327  T
Q  101 cgattgtacatacaaagcatggatatggattagaaggttctcttacacaatagtgc--cacaagaaataattgatcgcaagccatcactagttcataaat 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||    
T  40256326 cgattgtacatacaaagcatggatatggattagaaggttctcttacacaatagtgccacacaagaaagaattgatcgcaagccatcactagttcataaat 40256227  T
Q  199 ggattaagtatagtgttgtaatgtgtacatgttttaatcaaactacactaatttgttaagagataaatacatataaaaacagtcatgtgtgagacaat 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40256226 ggattaagtatagtgttgtaatgtgtacatgttttaatcaaactacactaatttgttaagagataaatacatataaaaacagtcatgtgtgagacaat 40256129  T

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