View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8770_high_13 (Length: 283)
Name: NF8770_high_13
Description: NF8770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8770_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 2 - 269
Target Start/End: Complemental strand, 19345445 - 19345178
Alignment:
| Q |
2 |
atatcttccggttaaaccccttgtgcgatcgaagagtgtgtgcaagtcgtggaacttcctcatcgccgatccaaaatttggaaaactacggctgcaacga |
101 |
Q |
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| T |
19345445 |
atatcttccggtgaaaccccttgtgcgatcgaagagtgtgtgcaagtcgtggaactccctcatctccgatccaaaatttggaaaactacggctgcaacga |
19345346 |
T |
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| Q |
102 |
tccacaagaaacagccacatagcagtaatcaaatatggctcaggttaccctaaaagttttgtatcctttccactgaaccacttattcgagaaaccgtcga |
201 |
Q |
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|| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||| |
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| T |
19345345 |
tctaaaagaaacagccacatagcagtaatcaaatatggctcaggttaccctaacagttttgtatcctttccactgaatcacttatttgagaacccgtcga |
19345246 |
T |
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| Q |
202 |
tcaccgttaccggtaattcttatcaccaattgaagttcaaccaacctagcccaattattggttcatgc |
269 |
Q |
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| T |
19345245 |
tcaccgttaccagtaattcttatcaccaactgaagttcaaccaacctagcccaattattggttcatgc |
19345178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 82 - 269
Target Start/End: Original strand, 19374050 - 19374234
Alignment:
| Q |
82 |
gaaaactacggctgcaacgatccacaagaaacagccacatagcagtaatcaaatatggctcaggttaccctaaaagttttgtatcctttccactgaacca |
181 |
Q |
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| T |
19374050 |
gaaaactacggcttcaatgatccacaagaaacagtcacatagca---atcaaatatggctcaggttaccgtaagagttttgtaacctttccactgaatca |
19374146 |
T |
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| Q |
182 |
cttattcgagaaaccgtcgatcaccgttaccggtaattcttatcaccaattgaagttcaaccaacctagcccaattattggttcatgc |
269 |
Q |
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| T |
19374147 |
cttattggagaacccgttgatccccattgccggtaattcataccaccaaatgaagttcaacgaacctagccgaattattggttcatgc |
19374234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 19373987 - 19374036
Alignment:
| Q |
2 |
atatcttccggttaaaccccttgtgcgatcgaagagtgtgtgcaagtcgt |
51 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19373987 |
atatcttccggtgaaaccccttgtgcgatcgaagagtgtgtgcaagtcgt |
19374036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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