View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8770_high_21 (Length: 222)
Name: NF8770_high_21
Description: NF8770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8770_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 25704207 - 25704012
Alignment:
| Q |
13 |
ataatactacgatattgtgtggaagaaagaggtgcctttgaaggtctcaatattggcttggaggttattactaaactgactacttacgaaagataatttg |
112 |
Q |
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| T |
25704207 |
ataatactacaatattgtgtggaagaaagaggtgcctttgaaggtctcaatattggcttggaggttattactaaactgactacttacgaaagataatttg |
25704108 |
T |
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| Q |
113 |
atacgttgtggaatcattctgcaaacat-aggtcagggtgcgagtgtctgtggtcaatttgaaagtgtagataatctgtttgtgagggtgtgcatt |
207 |
Q |
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| T |
25704107 |
atacatcgtggaatcattctgcaaacatcaggtcagtgtgcgagtgtctgtggtcaatttgaaagtgcagatcatctgtttgtgagggtgtgcatt |
25704012 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 32942795 - 32942976
Alignment:
| Q |
15 |
aatactacgatattgtgtggaagaaagaggtgcctttgaaggtctcaatattggcttggaggttattactaaactgactacttacgaaagataatttgat |
114 |
Q |
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||||||| |||||||||| |||| |||||| ||||||| ||| | |||||| | | ||||||||||||| | || |||| |||||||||||||| |
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| T |
32942795 |
aatactatgatattgtgtagaaggaagaggcacctttgacggttttgatattgatctataagttattactaaaccggcttcttagtaaagataatttgat |
32942894 |
T |
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| Q |
115 |
acgttgtggaatcattctgcaaacat-aggtcagggtgcgagtgtctgtggtcaatttgaaagtgtagataatctgtttgtg |
195 |
Q |
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| T |
32942895 |
acatcgtggaatgattccacaagcatcagattagtgtgcgagtgattgtggtcaatttgaaagtgcaaatcatctgtttgtg |
32942976 |
T |
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