View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8770_high_3 (Length: 559)
Name: NF8770_high_3
Description: NF8770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8770_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 33 - 547
Target Start/End: Complemental strand, 48546222 - 48545708
Alignment:
| Q |
33 |
acaaactagactcacacgttacaactcaaagtagaaaatgatgatagacaaaaggacaggcactaataagagaggctgaggaaagaaggtaaaatcacct |
132 |
Q |
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| T |
48546222 |
acaaactagactcacacgttacaactcaaagtagaaaatgatgatagacaaaaggacaggcactattaagagaggctgaggaaagaaggtaaaatcacct |
48546123 |
T |
|
| Q |
133 |
gccgtgtatcttcatatgacaaaaatgtttcccaaccttcatttgccatataatcacgacgaacaagttccacctcttctggtttaatttggtgatgaat |
232 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48546122 |
gccgtgtatcttcgtatgacaaaaatgtttcccaaccttcatttgccatataatcacgacgaacaagttccacctcttctggtttaatttggtgatgaat |
48546023 |
T |
|
| Q |
233 |
atcctacaaagaaacacagaatgtcggttggtgctccaaaataatactggttaacaaagtgtgtcaagatttaaaaatcttagttaaataaaatttccag |
332 |
Q |
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| T |
48546022 |
atcctacaaagaaacacagaatgtcggttggtgctccaaaataatactggttaacaaagtgtgtcaagatttaaaaatcttagttaaataaaatttccag |
48545923 |
T |
|
| Q |
333 |
acgagattggttctagataattacctggattccagcttctctggtgcgaacatcacgacattttaaacccaagtcttccattcgagctaatgctaactcc |
432 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48545922 |
acaagattggttctagataattacctggattccagcttctctggtgcgaacatcacgacattttaaacccaagtcttccattcgagctaatgctaactcc |
48545823 |
T |
|
| Q |
433 |
cttagattccctttctcaaccccagaggtcaccaaaggcattggaatatcccgctgaactctataaacacgtgtccatggaggtaccattgcaaggatcc |
532 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48545822 |
cttagattccctttctcaaccccagaggtcaccaaaggcattggaatatcccgctgaactctataaacacgtgtccatggaggtaccattgcaaggatcc |
48545723 |
T |
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| Q |
533 |
ttgctatgatgtcca |
547 |
Q |
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||||||||||||||| |
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| T |
48545722 |
ttgctatgatgtcca |
48545708 |
T |
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