View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8770_high_5 (Length: 384)
Name: NF8770_high_5
Description: NF8770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8770_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 3 - 287
Target Start/End: Original strand, 42518163 - 42518444
Alignment:
| Q |
3 |
ggttttaaatttaatctcatctacagttaatttgcgatatatcatagaaaattgagagacttatttcaagtttaaaatatttttcaccaaactatatatg |
102 |
Q |
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| T |
42518163 |
ggttttaaatttaatctcatctacagttaatttgcgatctatcattgaaaattgagagccttatttcaagtttaaaatatttttcaccaaactatatatg |
42518262 |
T |
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| Q |
103 |
ataataaaaagaactttagggaggatttggcttttctttacatccctcttgatgcatcagaaaatgaaccctttagagtttggactattattggttccat |
202 |
Q |
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| T |
42518263 |
ataataaaaagaactttagggaggatttgtcttttctttacatccctcttgatgcatcagaaaatgaaccctttagagtttggac---tattggttccat |
42518359 |
T |
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| Q |
203 |
tttgttgatattatcattccttagattgttaagattttttcataggtacacgattgtttagatttcaattaattaatttgatgag |
287 |
Q |
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| T |
42518360 |
tttgttgatattatcattccttagattgttaagattttttcataggtacacgattgtttagatttcaattaattaatttgatgag |
42518444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 42508740 - 42509087
Alignment:
| Q |
1 |
taggttttaaatttaatctcatctacagttaatttgcg----atatatcatagaaaattgagagacttatttcaagtttaaaatatttttcaccaaacta |
96 |
Q |
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| T |
42508740 |
taggttttaaatttaatctcatctacctttaatttacatacaatctatcatataaaattgaga--cttgttttaagttaaaaatatttttcatcaa-cta |
42508836 |
T |
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| Q |
97 |
tatatgataataaaaagaactttagggaggatttggcttttctttacatccctcttgatgcatcagaaaatgaaccctttagagtttggactattattgg |
196 |
Q |
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| T |
42508837 |
tacatgatagtaaaaagaacttttgggaggatttggcttttcattacatccttcttgatgtatcagaaaatgaaccatttag----------actgttgg |
42508926 |
T |
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| Q |
197 |
ttccattttgttgatattatcattccttagattgttaaga------ttttttcataggtacacgattgtttagatttcaattaattaatttgatgagtat |
290 |
Q |
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| T |
42508927 |
ctccattttgttgatattatcattccttatattgttaagatttttttttttttttaagtacacgattgtttagatttcaattaattaatttgatgagaaa |
42509026 |
T |
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| Q |
291 |
tatactaa-----------ttcattatgcacacttaatttgacacattaattctctcttgtg |
341 |
Q |
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| T |
42509027 |
ta-actaatgtagtataatttcattatgcacacttaattcgacacattaattctctcttgtg |
42509087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 286 - 341
Target Start/End: Original strand, 42518478 - 42518533
Alignment:
| Q |
286 |
agtattatactaattcattatgcacacttaatttgacacattaattctctcttgtg |
341 |
Q |
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| T |
42518478 |
agtattatactaattcattatgcacacttaatttgacacattaattctctcttgtg |
42518533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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