View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8770_high_7 (Length: 372)
Name: NF8770_high_7
Description: NF8770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8770_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 15 - 367
Target Start/End: Complemental strand, 1976342 - 1975990
Alignment:
| Q |
15 |
atatatttcctgaacaaaacaacaaaaattaggtcaaaacttcaacaataacaactctatcaacagaatttcatttcacaagaacaacacaaacctgagc |
114 |
Q |
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| T |
1976342 |
atatatttcctgaacaaaacaacaaaaattaggtcaaaacttcaacaataacaactctatcaacagaatttcattccacaagaacaacacaaacctgagc |
1976243 |
T |
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| Q |
115 |
cacaaagaacgaagtgattcccagtttattaataaaagctttcgcaatatctgcagttggagatcgagaagcgattgcaatatcgattcctttgtgttta |
214 |
Q |
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| T |
1976242 |
cacaaagaacgaagtgattcccagtttattaataaaagctttcgcaatatctgcagttggagatcgagaagcgattgcaatatcgattcctttgtgttta |
1976143 |
T |
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| Q |
215 |
agagccaacaagattcccatggcgtgaggatagagagaaggagattcgcgcttcgatcgacactcgcagtagaaaggccagagagtgtaatcgagatcga |
314 |
Q |
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| T |
1976142 |
agagccaacaagattcccatggcgtgaggatagagagaaggagattcgcgcttcgatcgacactcgcagtagaaaggccagagagtgtaatcgagatcga |
1976043 |
T |
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| Q |
315 |
aaacaacgagttttggaacaacttcgaatgattcgattatcttctctgcttct |
367 |
Q |
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| T |
1976042 |
aaacaacgagttttggaacaacttcgaatgattcgattatcttcactgcttct |
1975990 |
T |
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