View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8770_low_1 (Length: 657)
Name: NF8770_low_1
Description: NF8770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8770_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 555; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 1 - 642
Target Start/End: Complemental strand, 31820694 - 31820058
Alignment:
| Q |
1 |
tttcacgttgatttccgtcaatagtgagaccaaaaagaaaa-cttaagttactcattcagacttaaaccctaaacacactaattttgagcacattacatc |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31820694 |
tttcacgttgatttccgtcaatagtgagaccaaaaaaaaaaacttaagttactcatttagacttaaaccctaaacacactaattttgagcacattacatc |
31820595 |
T |
|
| Q |
100 |
accgacacaaatcacaaaagttctactacatctacctcttttttgtcaaaagaaatgagtgtgtctcacaacggaatcgtaaaaatagagttttaatcaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31820594 |
tccgacacaaatcacaaaagttctactacatctacctcttttttgtcaaaaaaaaagagtgtgtctcacaacggaatcgtaaaaatagagttttaatcga |
31820495 |
T |
|
| Q |
200 |
ttcttctaaagaaaaattaactaaatttattaatctatatactgtgttacagatttaaactttgaataatggtaagaacaccttctcgaacacacacttt |
299 |
Q |
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|||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31820494 |
ttcttctaaa-----attaactaaatttattaatctatatgctatgttacagatttaaactttgaataatggtaagaacaccttctcgaacacacacttt |
31820400 |
T |
|
| Q |
300 |
cttacctactctatactattgattgaaattcacgtagattcctctaaattactccacaagtgctggtataatataagaaaacaaaatgcacgataaagtg |
399 |
Q |
| |
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|||||||||||||| |||||| ||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31820399 |
cttacctactctatgctattggttgaaattcccttagattc-tctaaattactccacaagtgctggtataatataagaaaacaaaatgcacgataaagtg |
31820301 |
T |
|
| Q |
400 |
ggaattgaatttgaaacttacatgggcttggatcatgcagctctttccattattattgcacaagatgttggcatgtatgacatcaatcttatgtttctcc |
499 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31820300 |
ggaattgaatttgaaacttacatgggcttggatcatgcagctctttgcattattattgcacaagatgttggcatgtatgacatcaatcttatgtttctcc |
31820201 |
T |
|
| Q |
500 |
atcacataaaaaattgttgtcaacaagctcggcttcttagttgtgtatatgcaaaattgtgcttcatctccgcaaatgttaaaggtaacattttgagaaa |
599 |
Q |
| |
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|
| T |
31820200 |
atcacataaaaaattgttgtcaacaagctcggcttcttagttgtgtatatgcaaaattgtgcttcatctccgcaaatgttaaaggtaacattttgagaaa |
31820101 |
T |
|
| Q |
600 |
accacatttgttgaaaagctagtgcatttgaagttaccatctg |
642 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31820100 |
accacatttgttgaaaagctagtgcatttgaagttaccatctg |
31820058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 409 - 603
Target Start/End: Complemental strand, 33485853 - 33485659
Alignment:
| Q |
409 |
tttgaaacttacatgggcttggatcatgcagctctttccattattattgcacaagatgttggcatgtatgacatcaatcttatgtttctccatcacataa |
508 |
Q |
| |
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|||||||||||||||||| |||||| || |||||||| |||||||| ||||||||| || |||||||||||||||||||||| ||| || |
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| T |
33485853 |
tttgaaacttacatgggccataatcatgtagaagtttccatttgcattgcacataatgttggcagaaataacatcaatcttatgtttctccaacaccaaa |
33485754 |
T |
|
| Q |
509 |
aaaattgttgtcaacaagctcggcttcttagttgtgtatatgcaaaattgtgcttcatctccgcaaatgttaaaggtaacattttgagaaaacca |
603 |
Q |
| |
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|||||| ||||| | | ||||||||||||| | |||||||||||||||||| | || || ||||| || ||||||||||||| |||| |
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| T |
33485753 |
gcaattgtggtcaagagaccaggcttcttagttgaacaaatgcaaaattgtgcttcaccaccacatatgttcaacacaacattttgagaagacca |
33485659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 409 - 603
Target Start/End: Complemental strand, 33499064 - 33498870
Alignment:
| Q |
409 |
tttgaaacttacatgggcttggatcatgcagctctttccattattattgcacaagatgttggcatgtatgacatcaatcttatgtttctccatcacataa |
508 |
Q |
| |
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|||||||||||||||||| |||||| || |||||||| |||||||| ||||||||| || |||||||||||||||||||||| ||| || |
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| T |
33499064 |
tttgaaacttacatgggccataatcatgtagaagtttccatttgcattgcacataatgttggcagaaataacatcaatcttatgtttctccaacaccaaa |
33498965 |
T |
|
| Q |
509 |
aaaattgttgtcaacaagctcggcttcttagttgtgtatatgcaaaattgtgcttcatctccgcaaatgttaaaggtaacattttgagaaaacca |
603 |
Q |
| |
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| T |
33498964 |
gcaattgtggtcaagagaccaggcttcttagttgaacaaatgcaaaattgtgcttcaccaccacatatgttcaacacaacattttgagaagacca |
33498870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 6e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 416 - 618
Target Start/End: Original strand, 12079296 - 12079498
Alignment:
| Q |
416 |
cttacatgggcttggatcatgcagctctttccattattattgcacaagatgttgg-catgtatgacatcaatcttatgtttctccatcacataaaaaatt |
514 |
Q |
| |
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|||||||||||||| ||||||||||| || ||||||| ||||| ||||||||||| ||| |||||| |||||||||||||||||||| |||||||| ||| |
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| T |
12079296 |
cttacatgggcttgaatcatgcagctgtt-ccattatcattgcgcaagatgttggacatatatgacttcaatcttatgtttctccattacataaaagatt |
12079394 |
T |
|
| Q |
515 |
gttgtcaacaagctcggcttcttagttgtgtatatgcaaaattgtgcttcatctccgcaaatgttaaaggtaacattttgagaaaaccacatttgttgaa |
614 |
Q |
| |
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|| |||||| | || |||| |||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| | || |
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| T |
12079395 |
gtgatcaacatgtctggtctcttggttgagtatatgcaaaattgtgcttcatctccgcaaacactaaaggtaacatttagagaaaacaacatttgatcaa |
12079494 |
T |
|
| Q |
615 |
aagc |
618 |
Q |
| |
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|||| |
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|
| T |
12079495 |
aagc |
12079498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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