View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8770_low_12 (Length: 337)
Name: NF8770_low_12
Description: NF8770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8770_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 11169901 - 11169583
Alignment:
| Q |
1 |
atgatggcatcttagacgtctctgttacggaaaaagcctcgggaattgataaaaggtttaaaatagtaaatgacaagggaagactgtcacaggaggaagt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11169901 |
atgatggcatcttagacgtctctgttacggaaaaagcctcgggaattgataaaaggtttaaaatagtaaatgacaagggaagactgtcacaggaggaagt |
11169802 |
T |
|
| Q |
101 |
ttataagatgataagagaagctgagaaatacaaagatgaagacatgagacataggaagaaggttgaagcgagaaatgcactagagatgtacgcatacaat |
200 |
Q |
| |
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| ||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11169801 |
tgataggatgataagagaagctgacaaatacaaagatgaagacatgaggcataggaagaaggttgaagcgagaaatgcactagagatgtacgcatacaat |
11169702 |
T |
|
| Q |
201 |
atgagggaattcataaatgatccggatattagctcgaagatttcgtcaaaagaaaaggaaaagatcaataacgcaactgatttggtctttaagtggcttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11169701 |
atgagggaattcataaatgatccggatattagctcgaagatttcgtcaaaagaaaaggcaaacatcaataacgcaactgatttggtctttaagtggcttg |
11169602 |
T |
|
| Q |
301 |
acgttaatgtggttgcaga |
319 |
Q |
| |
|
||||||||||||||||||| |
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| T |
11169601 |
acgttaatgtggttgcaga |
11169583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 11208723 - 11208416
Alignment:
| Q |
1 |
atgatggcatcttagacgtctctgttacggaaaaagcctcgggaattgataaaaggtttaaaatagtaaatgacaagggaagactgtcacaggaggaagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
11208723 |
atgatggcatcttagacgtctctgttacggagaaagccttcggaatcgataaaaggtttaaaatagtaaatgacaagggaagactgtcaaaggaggaaat |
11208624 |
T |
|
| Q |
101 |
ttataagatgataagagaagctgagaaatacaaagatgaagacatgagacataggaagaaggttgaagcgagaaatgcactagagatgtacgcatacaat |
200 |
Q |
| |
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| | | |||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
11208623 |
tgagaggatgatcagtgaagctgagaaatacaaagatgaagacatgaggcataggaagaaggttgaatcgagaaatgcactagagaagtacgcatacaat |
11208524 |
T |
|
| Q |
201 |
atgagggaattcataaatgatccggatattagctcgaagatttcgtcaaaagaaaaggaaaagatcaataacgcaactgatttggtctttaagtggcttg |
300 |
Q |
| |
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|||||||| | |||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||| |
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| T |
11208523 |
atgagggattccataaatgatccagaagttagctcgaagctttcgtcaaaagaaaaggaaaagatcaataacgcagttgatttggtcttcatgtggcttg |
11208424 |
T |
|
| Q |
301 |
acgttaat |
308 |
Q |
| |
|
||| |||| |
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|
| T |
11208423 |
acgctaat |
11208416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 11275285 - 11274967
Alignment:
| Q |
1 |
atgatggcatcttagacgtctctgttacggaaaaagcctcgggaattgataaaaggtttaaaatagtaaatgacaagggaagactgtcacaggaggaagt |
100 |
Q |
| |
|
|||||||||||||| | | |||||| | ||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| | |
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|
| T |
11275285 |
atgatggcatcttacagttgtctgtttcagaaaaagacttgggaattgataaaaggtttaaaatagtaaataacaagggaagactgtcaaaagaggaaat |
11275186 |
T |
|
| Q |
101 |
ttataagatgataagagaagctgagaaatacaaagatgaagacatgagacataggaagaaggttgaagcgagaaatgcactagagatgtacgcatacaat |
200 |
Q |
| |
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| | | |||||| | ||||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
11275185 |
tgagaggatgatcaatgaagctgagaagtacaaagatgaagacattaggcataggaaaaaggttgaagcgagaaatgcactagagaagtacgcatacaat |
11275086 |
T |
|
| Q |
201 |
atgagggaattcataaatgatccggatattagctcgaagatttcgtcaaaagaaaaggaaaagatcaataacgcaactgatttggtctttaagtggcttg |
300 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| ||||||| |||| | ||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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|
| T |
11275085 |
atgagggatttcataaatgatcccgatattatctcgaagctttcattaaaagaaaaggaaaacatcaataatgcaactgatttggtctttaagtggcttg |
11274986 |
T |
|
| Q |
301 |
acgttaatgtggttgcaga |
319 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
11274985 |
acgttaatgtggttgcaga |
11274967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 73 - 319
Target Start/End: Complemental strand, 11165602 - 11165356
Alignment:
| Q |
73 |
acaagggaagactgtcacaggaggaagtttataagatgataagagaagctgagaaatacaaagatgaagacatgagacataggaagaaggttgaagcgag |
172 |
Q |
| |
|
|||| ||||| |||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
11165602 |
acaaaggaaggctgtcaaaggaggaagttgataggatgataagagaagctgagaaatacaaagatgaagacatgaggcataggaagaaggttgaagcgag |
11165503 |
T |
|
| Q |
173 |
aaatgcactagagatgtacgcatacaatatgagggaattcataaatgatccggatattagctcgaagatttcgtcaaaagaaaaggaaaagatcaataac |
272 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| | |||||||||||| ||| ||||||||||| |||||||||||||||||||||| ||||||||| |
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|
| T |
11165502 |
aaatgcactagagaggtacgcatacaatatgagggattccataaatgatccagatgttagctcgaagctttcgtcaaaagaaaaggaaaatatcaataac |
11165403 |
T |
|
| Q |
273 |
gcaactgatttggtctttaagtggcttgacgttaatgtggttgcaga |
319 |
Q |
| |
|
||| |||||||||||||||||||||||| | |||| ||||||||| |
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| T |
11165402 |
gcagttgatttggtctttaagtggcttgaagataataaggttgcaga |
11165356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 58 - 316
Target Start/End: Complemental strand, 11196012 - 11195754
Alignment:
| Q |
58 |
ttaaaatagtaaatgacaagggaagactgtcacaggaggaagtttataagatgataagagaagctgagaaatacaaagatgaagacatgagacataggaa |
157 |
Q |
| |
|
|||||||| ||| ||| ||||||||| ||||| |||||||| || | | |||||| | |||||||||||| |||||||||||||||| ||| ||| ||| |
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|
| T |
11196012 |
ttaaaataataagtgataagggaagattgtcaaaggaggaaattgagaggatgatcaaagaagctgagaagtacaaagatgaagacaagaggtatatgaa |
11195913 |
T |
|
| Q |
158 |
gaaggttgaagcgagaaatgcactagagatgtacgcatacaatatgagggaattc-ataaatgatccggatattagctcgaagatttcgtcaaaagaaaa |
256 |
Q |
| |
|
|||| | ||||||||| ||| | |||||| ||| |||||||| |||| ||||| | ||||||||| ||| ||||| | || | |||||||||||||||| |
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|
| T |
11195912 |
gaagctagaagcgagagatgtattagagaagtatgcatacaacatga-ggaatgcgataaatgataaggacattagtttgatgctttcgtcaaaagaaaa |
11195814 |
T |
|
| Q |
257 |
ggaaaagatcaataacgcaactgatttggtctttaagtggcttgacgttaatgtggttgc |
316 |
Q |
| |
|
||||||||||||||| |||| |||||||||||| | |||||| || ||||| |||||||| |
|
|
| T |
11195813 |
ggaaaagatcaataaagcaattgatttggtcttcatgtggctcgatgttaacgtggttgc |
11195754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 58 - 316
Target Start/End: Complemental strand, 11155565 - 11155307
Alignment:
| Q |
58 |
ttaaaatagtaaatgacaagggaagactgtcacaggaggaagtttataagatgataagagaagctgagaaatacaaagatgaagacatgagacataggaa |
157 |
Q |
| |
|
|||||||| ||| |||||||||||| ||||| ||||||| || | | || ||| | |||||||||||| |||||||||||||||| ||| ||| ||| |
|
|
| T |
11155565 |
ttaaaataataagtgacaagggaaggttgtcaaaggaggatattgagaggaagatcaaagaagctgagaagtacaaagatgaagacaagaggtatatgaa |
11155466 |
T |
|
| Q |
158 |
gaaggttgaagcgagaaatgcactagagatgtacgcatacaatatgagggaattc-ataaatgatccggatattagctcgaagatttcgtcaaaagaaaa |
256 |
Q |
| |
|
|||||| ||||||||| || |||||||| ||| |||||||| |||||| ||| | ||||||||| ||||||||| | || | |||||||||||||||| |
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|
| T |
11155465 |
gaaggtagaagcgagagttgtactagagacgtatgcatacaacatgagg-aatgctataaatgataaggatattagtttgatgctttcgtcaaaagaaaa |
11155367 |
T |
|
| Q |
257 |
ggaaaagatcaataacgcaactgatttggtctttaagtggcttgacgttaatgtggttgc |
316 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| |||||| || ||||| ||| |||| |
|
|
| T |
11155366 |
ggaaaagatcaataatgcacttgatttggtctttacgtggctcgatgttaacgtgattgc |
11155307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 315
Target Start/End: Original strand, 11242049 - 11242153
Alignment:
| Q |
212 |
cataaatgatccggatattagctcgaagatttcgtcaaaagaaaa--ggaaaagatcaataacgcaactgatttggtctttaagtggcttgacgttaatg |
309 |
Q |
| |
|
|||||||||| ||||||| |||||||| |||||| ||| ||||| ||||||||| ||||| |||| | |||||||||| | |||||||| ||||||| |
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|
| T |
11242049 |
cataaatgataaggatatttgctcgaagctttcgtaaaacgaaaaaaggaaaagattaataaagcaatt-atttggtcttcacatggcttgatgttaatg |
11242147 |
T |
|
| Q |
310 |
tggttg |
315 |
Q |
| |
|
|||||| |
|
|
| T |
11242148 |
tggttg |
11242153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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