View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8770_low_14 (Length: 324)
Name: NF8770_low_14
Description: NF8770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8770_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 95 - 307
Target Start/End: Complemental strand, 9080278 - 9080056
Alignment:
| Q |
95 |
agaaatgagacaaaggaagcaatttacatctcaggtttcctacctttaatctacaccactagactgtttttataacaaatcaatgacttacattcaatgg |
194 |
Q |
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| T |
9080278 |
agaaatgagacaaaggaagcaatttacatctcaggtttcctacctttaatctacaccattagaccgtttttataacaaatcaatgacttacattcaatgg |
9080179 |
T |
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| Q |
195 |
tttca----------atctttttagtggttcaaattaacggttacgagggaacacatgttttagtttgttttgttcctatcaaccaaaaaccacaatttt |
284 |
Q |
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| T |
9080178 |
tttcaagttggacgcatctttttagtggtccaaattaacagttacgagggaacacaagttttagtttgtcttgttcctctcaaccaaaaaccacaatttt |
9080079 |
T |
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| Q |
285 |
tgtggggaccataccttcctctt |
307 |
Q |
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| T |
9080078 |
tgtggggaccataccttcctctt |
9080056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 9080409 - 9080313
Alignment:
| Q |
1 |
tggcctaggcaatctgtgaatcccc-ttcattgacatcacaatccattgttcgagaacaatcttatccatggttgtctcgtgccaatgttgcttgag |
96 |
Q |
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| T |
9080409 |
tggcgtagggaatccgtgaatcccccttcattgacatcacaatccattgttcgagaacaatcttatccatggttgtctcgagccaatgttgcttgag |
9080313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 9088806 - 9088760
Alignment:
| Q |
249 |
tttgttttgttcctatcaaccaaaaaccacaatttttgtggggacca |
295 |
Q |
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| T |
9088806 |
tttgtcttgttcctctcaaccaaaaaccacaatttttgtagggacca |
9088760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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