View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8770_low_16 (Length: 295)
Name: NF8770_low_16
Description: NF8770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8770_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 284
Target Start/End: Complemental strand, 36715478 - 36715214
Alignment:
| Q |
20 |
tctgtcacggtattacaatcgcaaatttgactgcatcaatcacattttccaacaatataaatcatctttcagtaggtattttaacaaacatatattgtgc |
119 |
Q |
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| T |
36715478 |
tctgtcacggtattacaatcgcaaatttgactgcatcaatcacattttccaacaatataaatcatctttcactaggtattttaacaaacatatattgtgc |
36715379 |
T |
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| Q |
120 |
acttttaacctgtccatagtttatgataccagcagccgggcttatctcaatgtttccatagcgaatgagggatccttgagaaaacttttctccttttgtg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36715378 |
acttttaacctgtccatagtttatgataccagcagccgggcttatctcaatgtttccgtagcgaatgagggatccttgagaaaacttttctccttttgtg |
36715279 |
T |
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| Q |
220 |
catttcatgacatgcatgtaatctgtttgagtcagactaaaactaagtccttcccaattgatgtc |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36715278 |
catttcatgacatgcatgtaatctgtttgagtcagactaaaactaagtccttcccaattgatgtc |
36715214 |
T |
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