View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8770_low_2 (Length: 649)
Name: NF8770_low_2
Description: NF8770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8770_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 595; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 13 - 631
Target Start/End: Complemental strand, 30042234 - 30041616
Alignment:
| Q |
13 |
attattctgcaaattatattaatgttgaagtccatgatcctagtcaaggaagatggcatttacaagtttttatggattcctataagggagtcgaagacgc |
112 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30042234 |
attattctgaaaattatattaatgttgaagtccgtgatcctagtcaagggagatggcatttacaagtttttatggattcctataagggagtcgaagacgc |
30042135 |
T |
|
| Q |
113 |
aattcttgggattttttgagaaatttatcttgtggtacttcgcttcaatagtgtatccttggtgattttaatgatattttggatatctatgaaaagtgag |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30042134 |
aattcttgggattttttgagaaatttatcttgtggtacttcgcttcaatggtgtatccttggtgattttaatgatattttggatatctatgaaaagtgag |
30042035 |
T |
|
| Q |
213 |
ggggctttaagcgtgctaggtggttgattaacgatttaagataggttgttttttatgcaggtttaattgatgtgttaaaggagggggtattcttttacct |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30042034 |
ggggctttaagcgtgctaggtggttgattaacgatttaagataggttgttttttatgcaggtttaattgatatgttaaaggagggggtattcttttacct |
30041935 |
T |
|
| Q |
313 |
agtttaagagttcaggtactcctagagcagttaaagaaagatcggaccgtgctcttgcaaatgaagagtggttctagttgtatcctaatgccaagcaaga |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30041934 |
agtttaagagttcaggtactcctagagcagttaaagaaagatcggaccgtgctcttgcaaatgaagagtggttctagttgtatcctaatgccaagcaaga |
30041835 |
T |
|
| Q |
413 |
gaatttagtggcttcaacttctgatcattatccaattttattaaatagggataccgaatgctcgtgtctggatacctaaaagaaattttaaatttgagaa |
512 |
Q |
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| T |
30041834 |
gaatttagtggcttcaacttctgatcattatccaattttattaaatagggataccgaatgctcgtgtctggatacctaaaagaaattttaaatttgagaa |
30041735 |
T |
|
| Q |
513 |
tgcttggtgtgttgaaccatgtattcatgatgttgtttctgatagctgggtttctagtgcaggtttgttgattgttgaaaaactagatcattgcgcataa |
612 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30041734 |
tgcttggtgtgttgaaccatgtattcatgatgttgtttctgatagctgggtttctagtgcaggtttgttgattgttgaaaaactagatcattgtgcataa |
30041635 |
T |
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| Q |
613 |
gagcttagcacatggaaca |
631 |
Q |
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||||||||||||||||||| |
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| T |
30041634 |
gagcttagcacatggaaca |
30041616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 499 - 548
Target Start/End: Complemental strand, 14860465 - 14860416
Alignment:
| Q |
499 |
tttaaatttgagaatgcttggtgtgttgaaccatgtattcatgatgttgt |
548 |
Q |
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||||||||||||||||| ||||| ||||||||||||||| ||||||||| |
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| T |
14860465 |
tttaaatttgagaatgcatggtgcattgaaccatgtattcgtgatgttgt |
14860416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 473 - 573
Target Start/End: Complemental strand, 43992610 - 43992510
Alignment:
| Q |
473 |
ctcgtgtctggatacctaaaagaaattttaaatttgagaatgcttggtgtgttgaaccatgtattcatgatgttgtttctgatagctgggtttctagtgc |
572 |
Q |
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||||||||||| | |||||||||| |||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |||||| | |||||||| |
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| T |
43992610 |
ctcgtgtctgggtgcctaaaagaacctttaaatttgagaatgcttggtgtgtagaaccgagcattcatgatgttgtttctgacagctggttgtctagtgc |
43992511 |
T |
|
| Q |
573 |
a |
573 |
Q |
| |
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| |
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| T |
43992510 |
a |
43992510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 500 - 576
Target Start/End: Complemental strand, 23062678 - 23062602
Alignment:
| Q |
500 |
ttaaatttgagaatgcttggtgtgttgaaccatgtattcatgatgttgtttctgatagctgggtttctagtgcaggt |
576 |
Q |
| |
|
|||||||||| ||||| |||||||| |||||| | ||||||||| |||| |||||||||||| | |||||| ||||| |
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| T |
23062678 |
ttaaatttgaaaatgcatggtgtgtggaaccaggaattcatgatattgtctctgatagctggttatctagtacaggt |
23062602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 503 - 570
Target Start/End: Original strand, 32880471 - 32880538
Alignment:
| Q |
503 |
aatttgagaatgcttggtgtgttgaaccatgtattcatgatgttgtttctgatagctgggtttctagt |
570 |
Q |
| |
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||||||| ||||| |||||||| |||||| | ||||||||| |||| |||||||||||| | |||||| |
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| T |
32880471 |
aatttgaaaatgcatggtgtgtggaaccaggaattcatgatattgtctctgatagctggttatctagt |
32880538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 487 - 576
Target Start/End: Original strand, 21115159 - 21115248
Alignment:
| Q |
487 |
cctaaaagaaattttaaatttgagaatgcttggtgtgttgaaccatgtattcatgatgttgtttctgatagctgggtttctagtgcaggt |
576 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||||||||||||||| |||| |||||||||||||| ||| | |||||||||||||||||| |
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| T |
21115159 |
cctaaaagaaattttaagtttgaaaatgtgtggtgtgttgaaccaggtatccatgatgttgtttccgattgttgggtttctagtgcaggt |
21115248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 21114686 - 21114761
Alignment:
| Q |
13 |
attattctgcaaattatattaatgttgaagtccatgatcctagtcaaggaagatggc-atttacaagtttttatgg |
87 |
Q |
| |
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|||||||||| ||| ||||||||||||||||| |||||||||||| ||| ||||| ||||||| |||||||||| |
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| T |
21114686 |
attattctgctaatcatattaatgttgaagtcaatgatcctagtcgagggccatggcaatttacaggtttttatgg |
21114761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 473 - 554
Target Start/End: Original strand, 18478111 - 18478192
Alignment:
| Q |
473 |
ctcgtgtctggatacctaaaagaaattttaaatttgagaatgcttggtgtgttgaaccatgtattcatgatgttgtttctga |
554 |
Q |
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||||||||||| | |||||||||| |||||||||||||||||||||| ||| ||||| | |||||||||||||||||||| |
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| T |
18478111 |
ctcgtgtctgggtgcctaaaagaacctttaaatttgagaatgcttggtctgtagaaccgggcattcatgatgttgtttctga |
18478192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 502 - 576
Target Start/End: Original strand, 15229395 - 15229469
Alignment:
| Q |
502 |
aaatttgagaatgcttggtgtgttgaaccatgtattcatgatgttgtttctgatagctgggtttctagtgcaggt |
576 |
Q |
| |
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|||||||| |||||||||||||| |||| | | ||| ||||| ||||||||||||| ||| ||||||||||||| |
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| T |
15229395 |
aaatttgaaaatgcttggtgtgtggaacaaggaatttatgatattgtttctgatagttggtcttctagtgcaggt |
15229469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 576
Target Start/End: Complemental strand, 25907681 - 25907604
Alignment:
| Q |
499 |
tttaaatttgagaatgcttggtgtgttgaaccatgtattcatgatgttgtttctgatagctgggtttctagtgcaggt |
576 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||| | |||| |||| |||| |||||||||||| | |||||| ||||| |
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|
| T |
25907681 |
tttaaatttgaaaatgcatggtgtgtggaaccgggaattcgtgatattgtctctgatagctggttatctagtacaggt |
25907604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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