View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8770_low_21 (Length: 256)
Name: NF8770_low_21
Description: NF8770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8770_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 37157727 - 37157964
Alignment:
| Q |
13 |
gacatcactaagatacttacagagtgcttaatatcagacagaaatagttccttgcctttgattgaaggtttagatgaaaataatgaagagcataaagggg |
112 |
Q |
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| T |
37157727 |
gacatcactaagatacttacagagtgcttaatatcagacagaaatagttccttgcctttgattgaaggtttagatgaaaataatgaagagcataaagggg |
37157826 |
T |
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| Q |
113 |
atcatctggcaagaaaatgtgcagcggacgcttttcatgttcttatgagtgatgctgaagattgtttgaaccgaaaatttcatgccacgatgcggcctct |
212 |
Q |
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| T |
37157827 |
atcatttggcaagaaaatgtgcagcggacgcttttcatgttcttatgagtgatgctgaagattgtttgaaccgaaaatttcatgccacgatgcggcctct |
37157926 |
T |
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| Q |
213 |
ttataagcagaggtttttctcttccatgatgtccatct |
250 |
Q |
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| T |
37157927 |
ttataagcagaggtttttctcttccatgatgcccatct |
37157964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 43390864 - 43391093
Alignment:
| Q |
24 |
gatacttacagagtgcttaatatcagacagaa---atagttccttgcctttgattgaaggtttagatgaaaataatgaagagcataaaggggatcatctg |
120 |
Q |
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| T |
43390864 |
gatatttacagagtgcttaatatcagacagaagaaagacttccgtgcctttagttgaaggctcacttgaaaatactgaaaagcagaaatgtgatcctctg |
43390963 |
T |
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| Q |
121 |
gcaagaaaatgtgcagcggacgcttttcatgttcttatgagtgatgctgaagattgtttgaaccgaaaatttcatgccacgatgcggcctctttataagc |
220 |
Q |
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| T |
43390964 |
gcaaggaaatgtgccacggaagcttttcatgttcttatgagtgatgctgaagattgtttgaaccgaaaatttcatgccacagtacggcctctatataagc |
43391063 |
T |
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| Q |
221 |
agaggtttttctcttccatgatgtccatct |
250 |
Q |
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| T |
43391064 |
agaggtttttctcttccatgatgcccatct |
43391093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 119 - 250
Target Start/End: Original strand, 28908861 - 28908992
Alignment:
| Q |
119 |
tggcaagaaaatgtgcagcggacgcttttcatgttcttatgagtgatgctgaagattgtttgaaccgaaaatttcatgccacgatgcggcctctttataa |
218 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | | |||||| ||||| |
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| T |
28908861 |
tggcaagaaaatgtgtcgcggaagcttttcatgttcttatgagtgatgctgaagattgtttgaactgaaaatttcatgccacagtacagcctctatataa |
28908960 |
T |
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| Q |
219 |
gcagaggtttttctcttccatgatgtccatct |
250 |
Q |
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|| ||||||||||||||||| |||| |||||| |
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| T |
28908961 |
gccgaggtttttctcttccacgatgcccatct |
28908992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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