View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8770_low_25 (Length: 240)

Name: NF8770_low_25
Description: NF8770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8770_low_25
NF8770_low_25
[»] chr8 (4 HSPs)
chr8 (168-225)||(41959511-41959569)
chr8 (25-90)||(41959667-41959733)
chr8 (171-226)||(40842680-40842736)
chr8 (1-29)||(41959753-41959781)
[»] chr7 (2 HSPs)
chr7 (168-210)||(29586591-29586633)
chr7 (168-225)||(9992208-9992265)
[»] chr2 (1 HSPs)
chr2 (168-224)||(14489827-14489884)


Alignment Details
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 41959569 - 41959511
Alignment:
Q  168 tattgacatttcctactttggttaattaattagaatcttatt-catttattttattttt 225  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  41959569 tattgacatttcctactttggttaattaattagaatcttattccatctattttattttt 41959511  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 41959733 - 41959667
Alignment:
Q  25 tatatgatacacaagtgagataaagtcttgcatgatgcacaacaagttagttt-ctgtaacaatctg 90  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| ||||||    
T  41959733 tatatgatacacaagtgagataaagtcttgcatcatgcacaacaaattagtttcctgtaaaaatctg 41959667  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 40842736 - 40842680
Alignment:
Q  171 tgacatttcctactttggttaattaattagaatcttatt-catttattttatttttg 226  Q
    ||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  40842736 tgacatttcctactttggttaattaattagaattttattccatctattttatttttg 40842680  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 41959781 - 41959753
Alignment:
Q  1 ttgttggttattttggaggctaattatat 29  Q
    |||||||||||||||||||||||||||||    
T  41959781 ttgttggttattttggaggctaattatat 41959753  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 29586591 - 29586633
Alignment:
Q  168 tattgacatttcctactttggttaattaattagaatcttattc 210  Q
    ||||||||||||||||||||||||||||||| |||| ||||||    
T  29586591 tattgacatttcctactttggttaattaatttgaattttattc 29586633  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 9992208 - 9992265
Alignment:
Q  168 tattgacatttcctactttggttaattaattagaatcttatt-catttattttattttt 225  Q
    |||||||||||||||||||| |||||| |||||||| ||||| ||| ||||||||||||    
T  9992208 tattgacatttcctactttgattaatt-attagaattttattccatctattttattttt 9992265  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 14489827 - 14489884
Alignment:
Q  168 tattgacatttcctactttggttaattaattagaatcttatt-catttattttatttt 224  Q
    ||||| ||||||||||| |||||||||||||||||| ||||| ||| |||||||||||    
T  14489827 tattgtcatttcctactctggttaattaattagaattttattccatctattttatttt 14489884  T

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