View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8770_low_29 (Length: 212)

Name: NF8770_low_29
Description: NF8770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8770_low_29
NF8770_low_29
[»] chr6 (14 HSPs)
chr6 (28-192)||(2974576-2974740)
chr6 (14-192)||(2935168-2935349)
chr6 (13-192)||(2996703-2996882)
chr6 (27-192)||(2938029-2938194)
chr6 (22-184)||(2983443-2983605)
chr6 (13-192)||(2929878-2930059)
chr6 (52-192)||(2927729-2927869)
chr6 (13-177)||(2965111-2965280)
chr6 (27-184)||(2658311-2658474)
chr6 (13-117)||(2954726-2954829)
chr6 (69-192)||(3003174-3003293)
chr6 (69-184)||(2952513-2952624)
chr6 (21-72)||(2986421-2986472)
chr6 (28-60)||(2952657-2952689)
[»] scaffold0024 (1 HSPs)
scaffold0024 (14-192)||(34573-34751)
[»] chr7 (1 HSPs)
chr7 (14-184)||(3339602-3339775)
[»] chr3 (2 HSPs)
chr3 (70-192)||(49618980-49619102)
chr3 (69-176)||(49614021-49614128)


Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 28 - 192
Target Start/End: Complemental strand, 2974740 - 2974576
Alignment:
Q  28 aataattatgaactcaacaatgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaaga 127  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| || || |    
T  2974740 aataattatgaactcaacaatgaaagaaatcactaggatgcttgtactacttgcaagacagaacaaactctttgaattatagtgagaacaagtagaaaaa 2974641  T
Q  128 ttccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttc 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2974640 ttccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttc 2974576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 14 - 192
Target Start/End: Complemental strand, 2935349 - 2935168
Alignment:
Q  14 ataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaggcttgt---actacttgcaagacagaacaaactgtttgaattatagt 110  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   || |||||||||||||||||||||| ||||| || |||    
T  2935349 ataatactaatagaaataattatgaactcaacaatgaaagaaatcactaggaggcttgttgtacaacttgcaagacagaacaaactgattgaagtaaagt 2935250  T
Q  111 gagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttc 192  Q
    ||||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||||    
T  2935249 gagaaaaagtagtaagattccagcaatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagccttc 2935168  T

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Target: chr6; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 2996703 - 2996882
Alignment:
Q  13 gataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaactgtttgaattatagtga 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| | |||||    
T  2996703 gataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaataaaagtga 2996802  T
Q  113 gaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttc 192  Q
    ||||||| ||||  |||||||||| |||||||||||  ||||||||||| |||| |||||||||||| |||| |||||||    
T  2996803 gaacaagtagtacaattccagcaaaggaagcagcagcttgccaaggagtcttgccataatcacgcctgagagtagccttc 2996882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 27 - 192
Target Start/End: Complemental strand, 2938194 - 2938029
Alignment:
Q  27 caataattatgaactcaacaatgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaag 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||| ||| ||||||    
T  2938194 caataattatgaactcaacaatgaaagaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaataagtagtaag 2938095  T
Q  127 attccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttc 192  Q
    ||||||||||||||||||||||| ||||||||||| |||| |||||||||||| |||| |||||||    
T  2938094 attccagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtagccttc 2938029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 22 - 184
Target Start/End: Complemental strand, 2983605 - 2983443
Alignment:
Q  22 aatagcaataattatgaactcaacaatgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagca 121  Q
    |||| ||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  2983605 aataacaataattatgaactcaacaatgaaagaaatgactaggatgcttgtactatttgcaagacagaacaaactgtttgaattatagtgagaacaagta 2983506  T
Q  122 gtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagag 184  Q
    |||||| |||||||| |||||||||| | | |||||||||||||| |||||||||||| ||||    
T  2983505 gtaagactccagcaacggaagcagcaattttccaaggagtattgccataatcacgcctgagag 2983443  T

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Target: chr6; HSP #6
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 2930059 - 2929878
Alignment:
Q  13 gataatactaatagcaataattatgaactcaacaatgaaagaaatca--ctaggaggcttgtactacttgcaagacagaacaaactgtttgaattatagt 110  Q
    |||||||  |||| |||||||||||||||||||||| ||||||||||  ||||||||||||||| |||||||||||||||||||||| ||||| || |||    
T  2930059 gataataagaataacaataattatgaactcaacaataaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagt 2929960  T
Q  111 gagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttc 192  Q
    ||||| ||| ||||||| ||||||||||||||||||||| |||||||||||| | |||||||||||||| |||| |||||||    
T  2929959 gagaaaaagtagtaagaatccagcaatggaagcagcagtttgccaaggagtacttcaataatcacgcctgagagtagccttc 2929878  T

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Target: chr6; HSP #7
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 52 - 192
Target Start/End: Complemental strand, 2927869 - 2927729
Alignment:
Q  52 agaaatcactaggaggcttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgt 151  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||| ||||||||||| ||||||||||||||||| |    
T  2927869 agaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaacaagtagtaagattcccgcaatggaagcagcagttt 2927770  T
Q  152 gccaaggagtattgcaataatcacgccttagagcagccttc 192  Q
    |||||||||| ||||||||||||||||| |||| |||||||    
T  2927769 gccaaggagttttgcaataatcacgcctgagagtagccttc 2927729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 177
Target Start/End: Complemental strand, 2965280 - 2965111
Alignment:
Q  13 gataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaggc---------ttgtactacttgcaagacagaacaaactgtttgaa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||         |||||||||||||||||    ||||||||||||||    
T  2965280 gataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaagcattaggttgttgtactacttgcaaga----acaaactgtttgaa 2965185  T
Q  104 ttatagtgagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgc 177  Q
    ||| |||||||||||| |||||||||||||||| |||||||||||  |||||||||||| |||| |||||||||    
T  2965184 ttaaagtgagaacaagtagtaagattccagcaaaggaagcagcagcttgccaaggagtactgcagtaatcacgc 2965111  T

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Target: chr6; HSP #9
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 27 - 184
Target Start/End: Original strand, 2658311 - 2658474
Alignment:
Q  27 caataattatgaactcaacaatgaaagaaatcactaggaggc------ttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagc 120  Q
    ||||||||||||||  |||||||||||||||||||||||| |      |||||||||||| |||||||||||||||||||||||||||||||||| |||     
T  2658311 caataattatgaaccgaacaatgaaagaaatcactaggagccattaggttgtactacttgaaagacagaacaaactgtttgaattatagtgagaataagt 2658410  T
Q  121 agtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagag 184  Q
    |||||||||||||||| ||||||| |||  | |||||||||| |||||||||||||||| ||||    
T  2658411 agtaagattccagcaaaggaagcaccagctttccaaggagtactgcaataatcacgcctcagag 2658474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 2954829 - 2954726
Alignment:
Q  13 gataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaactgtttgaattatagtga 112  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||    
T  2954829 gataatactaatagcaataat-atgaactcaacattgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaattgattgaagtaaagtga 2954731  T
Q  113 gaaca 117  Q
     ||||    
T  2954730 taaca 2954726  T

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Target: chr6; HSP #11
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 69 - 192
Target Start/End: Original strand, 3003174 - 3003293
Alignment:
Q  69 ttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaa 168  Q
    |||||||||||||||||    |||||||||||||| || ||||||| |||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||    
T  3003174 ttgtactacttgcaaga----acaaactgtttgaagtaaagtgagagcaaggagtaagattccagcaatggaagcagcagtttgccagggagttttgcaa 3003269  T
Q  169 taatcacgccttagagcagccttc 192  Q
    ||||||||||| |||| |||||||    
T  3003270 taatcacgcctgagagtagccttc 3003293  T

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Target: chr6; HSP #12
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 69 - 184
Target Start/End: Complemental strand, 2952624 - 2952513
Alignment:
Q  69 ttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaa 168  Q
    |||||||||||||||||    |||||||||||||| || ||||||| |||| |||| |||||||||||||||||||||||| ||||||||||| |||| |    
T  2952624 ttgtactacttgcaaga----acaaactgtttgaagtaaagtgagagcaaggagtacgattccagcaatggaagcagcagtttgccaaggagttttgcca 2952529  T
Q  169 taatcacgccttagag 184  Q
    ||||||||||| ||||    
T  2952528 taatcacgcctcagag 2952513  T

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Target: chr6; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 2986472 - 2986421
Alignment:
Q  21 taatagcaataattatgaactcaacaatgaaagaaatcactaggaggcttgt 72  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2986472 taataacaataattatgaactcaacaatgaaagaaatcactaggaggcttgt 2986421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 2952689 - 2952657
Alignment:
Q  28 aataattatgaactcaacaatgaaagaaatcac 60  Q
    |||||||||||||||||||||||||||||||||    
T  2952689 aataattatgaactcaacaatgaaagaaatcac 2952657  T

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Target: scaffold0024 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 34573 - 34751
Alignment:
Q  14 ataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaactgtttgaattatagtgag 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  | ||||||    
T  34573 ataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaactgattgaagcaaagtgag 34672  T
Q  114 aacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttc 192  Q
    |||||| ||||| |||||||||| |||||||||||| ||||||||||| |||| |||||||||||| |||| |||||||    
T  34673 aacaagtagtaaaattccagcaacggaagcagcagtttgccaaggagttttgccataatcacgcctgagagaagccttc 34751  T

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Target: chr7 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 3339775 - 3339602
Alignment:
Q  14 ataatactaatagcaataattatga---actcaacaatgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaactgtttgaattatagt 110  Q
    |||||||||| ||||||||||||||   ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| || |||    
T  3339775 ataatactaagagcaataattatgatgaactcaacaaagaaagaaatcactaggaggcctgtactacttgcaagacagaacaaactgattgaagtaaagt 3339676  T
Q  111 gagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagag 184  Q
    ||||||||| ||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  3339675 gagaacaagtagtacaattccagcaatggaagcagcagtttgccaaggagtattgcaataatcacgcctgagag 3339602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 70 - 192
Target Start/End: Complemental strand, 49619102 - 49618980
Alignment:
Q  70 tgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaat 169  Q
    ||||| |||||||||| ||||||||||| ||||| || || ||||||||| ||||| ||||||||||||||||||||||| |||||||||||| ||| ||    
T  49619102 tgtacaacttgcaagatagaacaaactgattgaagtaaagagagaacaagtagtaaaattccagcaatggaagcagcagtttgccaaggagtactgccat 49619003  T
Q  170 aatcacgccttagagcagccttc 192  Q
    |||||||||| |||| |||||||    
T  49619002 aatcacgcctgagagtagccttc 49618980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 69 - 176
Target Start/End: Complemental strand, 49614128 - 49614021
Alignment:
Q  69 ttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaa 168  Q
    |||||| |||||||| || | |||||||| ||||| || || ||||| ||| ||||| ||||||||||||||||||||||| ||||||||| | ||||||    
T  49614128 ttgtacaacttgcaacactgcacaaactgattgaagtaaagagagaataagtagtaaaattccagcaatggaagcagcagtttgccaaggactgttgcaa 49614029  T
Q  169 taatcacg 176  Q
    ||||||||    
T  49614028 taatcacg 49614021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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