View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8770_low_3 (Length: 594)
Name: NF8770_low_3
Description: NF8770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8770_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 578
Target Start/End: Complemental strand, 45060107 - 45059528
Alignment:
| Q |
1 |
tatatactatactatatacaatacaaaattacaaatccagaaaagcaagatcaacaatgcaatacttaatcannnnnnnnnnn--aatccaagcagacaa |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45060107 |
tatatactatactatatacaatacaaaattacaaatccagaaaagcaagatcaacaatgcaatacttaatcatttttttttttttaatccaagcagacaa |
45060008 |
T |
|
| Q |
99 |
aaaataataataaccatccatgcttatgacatgcacaagatttgttacacttccatgattatattacataacatatgctttatcataacatctttttaga |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45060007 |
aaaataataataaccatccatgcttatgacatgcacaagatttgttacacttccatgattatattacataacatatgctttatcataacatctttttaga |
45059908 |
T |
|
| Q |
199 |
taaaatctatacaacataatgtgcttcataatttcttcatggacccctcttcatttatctcaaaagctccttaattttgatcaatttagtaattccacaa |
298 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45059907 |
taaaatctatacaacataatatgcttcataatttcttcatggacccctcttcatttatctcaaaagctccttaatttggatcaatttagtaattccacaa |
45059808 |
T |
|
| Q |
299 |
agtaccatcaaaatcaacggctgcaacagaagcaggtggtggacgattctgattattctcaaaagtccttctaccaatatcaaaatttgacacaacagaa |
398 |
Q |
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| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45059807 |
attaccatcaaaatcaacagctgcaacagaagcaggtggtggacgattctgattattctcaaaagtccttctaccaatatccaaatttgacacaacagaa |
45059708 |
T |
|
| Q |
399 |
catgtttcagcattcatatcagtagttagatcagtttcctgtgacacactcataatttgttgctgtctctcagtcttgaaaccattgttttcatacaaag |
498 |
Q |
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| T |
45059707 |
catgtttcagcattcatatcagtagttagatcagtttcctgtgacacactcataatttgttgctgtctctcagtcttgaaaccattgttttcatacaaag |
45059608 |
T |
|
| Q |
499 |
ctcttaaaattgcttgatcttgcataccacaaacagaacttggatattgcaaattaaccgcagcttgattattagagtat |
578 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45059607 |
ctcttaaaattgcttgatcttgcataccacaaacagaacttggatattgcaaattaaccgcagcttgattattagagtat |
45059528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 253 - 363
Target Start/End: Complemental strand, 43352413 - 43352303
Alignment:
| Q |
253 |
ttatctcaaaagctccttaattttgatcaatttagtaattccacaaagtaccatcaaaatcaacggctgcaacagaagcaggtggtggacgattctgatt |
352 |
Q |
| |
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|||||||||||| |||| ||||| |||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| |||||| || |||||||| |
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| T |
43352413 |
ttatctcaaaagttcctcaatttgaatcaatttagtaattccacaaagttccatcgaaatcaaaagctgcaacagaagcaagtggtgaacagttctgatt |
43352314 |
T |
|
| Q |
353 |
attctcaaaag |
363 |
Q |
| |
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|||| |||||| |
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| T |
43352313 |
attcacaaaag |
43352303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 43352563 - 43352486
Alignment:
| Q |
136 |
agatttgttacacttccatgattatattacataacatatgctttatcataacatctttttagataaaatctatacaaca |
214 |
Q |
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||||||||||||| ||||||| |||||| || ||||||||||| || ||||||||||||||||||||| |||||||||| |
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| T |
43352563 |
agatttgttacacgtccatgactatattgca-aacatatgcttcattataacatctttttagataaaaactatacaaca |
43352486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 493
Target Start/End: Complemental strand, 35363283 - 35363242
Alignment:
| Q |
452 |
aatttgttgctgtctctcagtcttgaaaccattgttttcata |
493 |
Q |
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||||||||| | ||||||||| |||||||||||||||||||| |
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| T |
35363283 |
aatttgttgttatctctcagttttgaaaccattgttttcata |
35363242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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