View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8770_low_5 (Length: 541)

Name: NF8770_low_5
Description: NF8770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8770_low_5
NF8770_low_5
[»] chr1 (1 HSPs)
chr1 (1-527)||(20792685-20793211)


Alignment Details
Target: chr1 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Original strand, 20792685 - 20793211
Alignment:
Q  1 gatacatgagaagatgaacagttctcaaactgaagctctgattgtaagaagacaaagccctctgcaattctttatcatcgatcaaaccacttccatcttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20792685 gatacatgagaagatgaacagttctcaaactgaagctctgattgtaagaagacaaagccctctgcaattctttatcatcgatcaaaccacttccatcttg 20792784  T
Q  101 atccgccacttgaaagcatgcaacgatgcttggatcggtaccgggagggaatgttgacggaaccagtgaagcgaacgggcttgcatacgccggcggtggg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  20792785 atccgccacttgaaagcatgcaacgatgcttggatcggtaccgggagggaatgttgacggaaccagtgaagcgaacgggcttgcgtacgccggtggtggg 20792884  T
Q  201 taggcagagccaccgccgccggaggagtgagaatcttcctttggtggtttctggtaaggggcggcgtaaggagcggagggttggccgtaggaggtggggg 300  Q
    |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20792885 taggtagcgccaccgccgccggaggagtgagaatcttcctttggtggtttctggtaaggggcggcgtaaggagcggagggttggccgtaggaggtggggg 20792984  T
Q  301 gaggagcaccgtaggactgagatggcggtggtgcgccgtaggattgagatggaggaggagcgccgtaggattgggatggtggatgtgagccgtgggattg 400  Q
    | || || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20792985 gtggtgcgccgtaggattgagatggcggtggtgcgccgtaggattgagatggaggaggagcgccgtaggattgggatggtggatgtgagccgtgggattg 20793084  T
Q  401 agatggcggaggggcaccgtaggatgatggtggatgtgagccgtgagattgggaaggaggtggtgcgccgtaggattgggatggtggtggtgcgccgtag 500  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  20793085 agatggaggaggggcaccgtaggatgatggtggatgtgagccgtgagattgggaaggaggtggtgcgccgtaggattgggaaggaggtggtgcgccgtag 20793184  T
Q  501 ccgtaaccgtaactgggaggttgattt 527  Q
    |||||||||||||||||||||||||||    
T  20793185 ccgtaaccgtaactgggaggttgattt 20793211  T

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