View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8770_low_9 (Length: 344)
Name: NF8770_low_9
Description: NF8770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8770_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 40256419 - 40256749
Alignment:
| Q |
1 |
atactattaattttctttgtggcgtcaaacaacatataaacttaagtttcactagttaatagaaatatacatttggacaaagtcatatttcttgtttaac |
100 |
Q |
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| T |
40256419 |
atactattaattttctttgtggcgtcaaacaacatataaacttaagtttcactggttaatagaaatatacatttggacaacgtcatatttcttgattaac |
40256518 |
T |
|
| Q |
101 |
atttcatagaacttcaaataaatgtaatatatttaagagaaatgttatcgagtgcctcttagatttagtagacaagaaatttattatggaatttgat--- |
197 |
Q |
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| T |
40256519 |
atttcatagaacttcaaataaatgtaatatatttaagggaaatgttaacgagtgcctcttagatttagtagacaagacattcattatggaatttgataaa |
40256618 |
T |
|
| Q |
198 |
--nnnnnnnncattttaaatcatacaacataccctgtagtgtaacacaatccagacaagttggcaacttgaaacaaagctgatctccatttttgtatctt |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40256619 |
aaaaaaaaaacattttaaatcatacaacataccctgtagtgtaacacaatccagacaagttggcaacttgaaacaaagctgatctccatttttgtatctt |
40256718 |
T |
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| Q |
296 |
ctcataatcatttccaaaattattttgatgt |
326 |
Q |
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|||||||||||||||||||||||||| |||| |
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| T |
40256719 |
ctcataatcatttccaaaattattttcatgt |
40256749 |
T |
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