View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8771_high_10 (Length: 303)

Name: NF8771_high_10
Description: NF8771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8771_high_10
NF8771_high_10
[»] chr2 (12 HSPs)
chr2 (31-142)||(43622076-43622186)
chr2 (201-243)||(43621975-43622017)
chr2 (203-243)||(22303207-22303247)
chr2 (203-237)||(3091745-3091779)
chr2 (203-236)||(14891112-14891145)
chr2 (203-236)||(15505179-15505212)
chr2 (203-243)||(3299132-3299172)
chr2 (201-237)||(3924158-3924194)
chr2 (203-243)||(8805234-8805274)
chr2 (203-239)||(20507618-20507654)
chr2 (203-243)||(29871379-29871419)
chr2 (203-243)||(29893614-29893654)
[»] chr5 (10 HSPs)
chr5 (201-243)||(3154670-3154712)
chr5 (203-243)||(7144581-7144621)
chr5 (203-238)||(19844341-19844376)
chr5 (203-242)||(28056410-28056449)
chr5 (203-236)||(38890418-38890451)
chr5 (203-243)||(582894-582934)
chr5 (202-238)||(18658215-18658251)
chr5 (203-243)||(29803229-29803269)
chr5 (203-243)||(32379956-32379996)
chr5 (203-243)||(41179401-41179441)
[»] chr8 (9 HSPs)
chr8 (203-243)||(14531625-14531665)
chr8 (203-243)||(12697740-12697780)
chr8 (203-243)||(14228711-14228751)
chr8 (203-243)||(29913568-29913608)
chr8 (204-236)||(34037520-34037552)
chr8 (201-238)||(33511745-33511782)
chr8 (202-238)||(13540800-13540836)
chr8 (202-238)||(13683637-13683673)
chr8 (203-243)||(40380285-40380325)
[»] chr7 (15 HSPs)
chr7 (202-240)||(34690954-34690992)
chr7 (203-240)||(5068653-5068690)
chr7 (203-239)||(26153650-26153686)
chr7 (203-243)||(40760795-40760835)
chr7 (208-243)||(677802-677837)
chr7 (203-237)||(10945026-10945060)
chr7 (203-240)||(2849551-2849588)
chr7 (203-232)||(10014993-10015022)
chr7 (203-243)||(11604709-11604749)
chr7 (207-243)||(12141907-12141943)
chr7 (203-243)||(22692088-22692128)
chr7 (203-243)||(29763834-29763874)
chr7 (203-239)||(30818028-30818064)
chr7 (203-243)||(37385260-37385300)
chr7 (203-243)||(47530318-47530358)
[»] chr4 (18 HSPs)
chr4 (202-239)||(21152654-21152691)
chr4 (203-243)||(12074476-12074516)
chr4 (203-243)||(24088591-24088631)
chr4 (203-243)||(36444422-36444462)
chr4 (203-238)||(44626609-44626644)
chr4 (203-237)||(34114150-34114184)
chr4 (203-237)||(52430881-52430915)
chr4 (207-237)||(52632164-52632194)
chr4 (203-232)||(32464642-32464671)
chr4 (203-243)||(3475873-3475913)
chr4 (203-243)||(8455865-8455905)
chr4 (203-243)||(11012145-11012185)
chr4 (203-243)||(19879777-19879817)
chr4 (203-243)||(32901333-32901373)
chr4 (203-239)||(39449177-39449213)
chr4 (203-243)||(44272837-44272877)
chr4 (207-243)||(45922014-45922050)
chr4 (203-243)||(47014943-47014983)
[»] chr3 (12 HSPs)
chr3 (203-240)||(21239108-21239145)
chr3 (203-243)||(1295336-1295376)
chr3 (207-243)||(16139322-16139358)
chr3 (203-243)||(36799402-36799442)
chr3 (199-238)||(16675901-16675940)
chr3 (201-236)||(49031437-49031472)
chr3 (205-243)||(35987254-35987292)
chr3 (203-236)||(30633706-30633739)
chr3 (203-243)||(7867738-7867778)
chr3 (203-243)||(22836222-22836262)
chr3 (203-243)||(37134633-37134673)
chr3 (203-243)||(43499588-43499628)
[»] chr1 (13 HSPs)
chr1 (202-239)||(41619059-41619096)
chr1 (203-243)||(26585200-26585240)
chr1 (203-243)||(34395946-34395986)
chr1 (203-238)||(29706735-29706770)
chr1 (203-236)||(52261343-52261376)
chr1 (203-243)||(7078527-7078567)
chr1 (203-243)||(26839386-26839426)
chr1 (203-243)||(27352634-27352674)
chr1 (203-243)||(31184285-31184325)
chr1 (203-243)||(32873345-32873385)
chr1 (201-237)||(38627334-38627370)
chr1 (207-243)||(41459767-41459803)
chr1 (203-243)||(49699779-49699819)
[»] scaffold0154 (1 HSPs)
scaffold0154 (203-237)||(4319-4353)
[»] chr6 (3 HSPs)
chr6 (203-237)||(736853-736887)
chr6 (203-241)||(3401088-3401126)
chr6 (203-237)||(29172994-29173028)
[»] scaffold0662 (1 HSPs)
scaffold0662 (203-243)||(1082-1122)
[»] scaffold0252 (1 HSPs)
scaffold0252 (203-243)||(8002-8042)


Alignment Details
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 142
Target Start/End: Complemental strand, 43622186 - 43622076
Alignment:
Q  31 atcataatcgtaatcataatcttctaattgtaataatttgttgaataagagcttctctacaatannnnnnnnnnnaaaatgtataatctgcttgattttt 130  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||| ||||||    
T  43622186 atcataatcataatcataatcttctaattgtaataatttgttgaataagagcttctctacaata-tattttttttaaaatgtataatctgctttattttt 43622088  T
Q  131 actcgatataaa 142  Q
    ||||||||||||    
T  43622087 actcgatataaa 43622076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 43622017 - 43621975
Alignment:
Q  201 gtaatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  43622017 gtaatgatatttgtacaactattttatgacaacttttgaacaa 43621975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 22303207 - 22303247
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||||||||| ||| |||||||||||||    
T  22303207 aatgatatttgtacaactattttttgacaacttttgaacaa 22303247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 3091745 - 3091779
Alignment:
Q  203 aatgatatttgtacaactattttatgataactttt 237  Q
    ||||||||||||||||||||||| |||||||||||    
T  3091745 aatgatatttgtacaactattttgtgataactttt 3091779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 14891145 - 14891112
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttt 236  Q
    ||||||||||||||||||||||| ||||||||||    
T  14891145 aatgatatttgtacaactattttgtgataacttt 14891112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 15505179 - 15505212
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttt 236  Q
    ||||||||||| ||||||||||||||||||||||    
T  15505179 aatgatatttgaacaactattttatgataacttt 15505212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 3299172 - 3299132
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||| ||||||||| ||||||| |||||    
T  3299172 aatgatatttgtacaaccattttatgacaacttttaaacaa 3299132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 3924194 - 3924158
Alignment:
Q  201 gtaatgatatttgtacaactattttatgataactttt 237  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  3924194 gtaatgatatttgtacaattattttatgataattttt 3924158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 8805234 - 8805274
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    |||||||| ||||||||||||||||||||| ||||| ||||    
T  8805234 aatgatatatgtacaactattttatgataatttttggacaa 8805274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 20507654 - 20507618
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttga 239  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  20507654 aatgatatttgaacaactattttataataacttttga 20507618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 29871419 - 29871379
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    |||||||||||||||| || ||||||| |||||||||||||    
T  29871419 aatgatatttgtacaattagtttatgacaacttttgaacaa 29871379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 29893614 - 29893654
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||||| ||| |||||||||||| ||||    
T  29893614 aatgatatttgtacaactaatttgtgataacttttgtacaa 29893654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 3154712 - 3154670
Alignment:
Q  201 gtaatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  3154712 gtaatgatatttgtacaactattttatgataacttttgtacaa 3154670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 7144581 - 7144621
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  7144581 aatgatatttgtacaaccattttatgataacttttaaacaa 7144621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 19844376 - 19844341
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttg 238  Q
    ||||||||||||||||||||||| ||||||||||||    
T  19844376 aatgatatttgtacaactattttttgataacttttg 19844341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 28056449 - 28056410
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaaca 242  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  28056449 aatgatattcgtaaaactattttatgataacttttgaaca 28056410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 38890418 - 38890451
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttt 236  Q
    |||||||||| |||||||||||||||||||||||    
T  38890418 aatgatatttatacaactattttatgataacttt 38890451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 582934 - 582894
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    |||||||||| |||||||||||| ||||||||||| |||||    
T  582934 aatgatatttttacaactattttgtgataacttttaaacaa 582894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 18658215 - 18658251
Alignment:
Q  202 taatgatatttgtacaactattttatgataacttttg 238  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  18658215 taatgatatttgtacaattatttgatgataacttttg 18658251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 29803229 - 29803269
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||||||||| ||| ||||||| |||||    
T  29803229 aatgatatttgtacaactattttttgacaacttttaaacaa 29803269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 32379996 - 32379956
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    |||| |||||||||||||| ||||||| |||||||||||||    
T  32379996 aatggtatttgtacaactagtttatgacaacttttgaacaa 32379956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 41179401 - 41179441
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    |||| |||||||||||| ||||||||||||||||| |||||    
T  41179401 aatgttatttgtacaaccattttatgataacttttaaacaa 41179441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 14531625 - 14531665
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  14531625 aatgatatttgtacaactattttatgataacttttgtacaa 14531665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 12697780 - 12697740
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    |||||||||| ||||||||||||||||||| ||||||||||    
T  12697780 aatgatatttatacaactattttatgataatttttgaacaa 12697740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 14228711 - 14228751
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  14228711 aatgatatttgtacaactattttgtgataacttttgtacaa 14228751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 29913568 - 29913608
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    |||||||||||||||||||||||||||||| |||| |||||    
T  29913568 aatgatatttgtacaactattttatgataatttttaaacaa 29913608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 34037552 - 34037520
Alignment:
Q  204 atgatatttgtacaactattttatgataacttt 236  Q
    |||||||||||||||||||||||||||||||||    
T  34037552 atgatatttgtacaactattttatgataacttt 34037520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 33511782 - 33511745
Alignment:
Q  201 gtaatgatatttgtacaactattttatgataacttttg 238  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  33511782 gtaatgatatttgtacaactattttgtgaaaacttttg 33511745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 13540800 - 13540836
Alignment:
Q  202 taatgatatttgtacaactattttatgataacttttg 238  Q
    |||||||||||||||||||||||  ||||||||||||    
T  13540800 taatgatatttgtacaactatttagtgataacttttg 13540836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 13683673 - 13683637
Alignment:
Q  202 taatgatatttgtacaactattttatgataacttttg 238  Q
    |||||||||||||||||||||||  ||||||||||||    
T  13683673 taatgatatttgtacaactatttagtgataacttttg 13683637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 40380285 - 40380325
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||| ||||||||||| |||||||| ||||    
T  40380285 aatgatatttgtacatctattttatgacaacttttgtacaa 40380325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 34690992 - 34690954
Alignment:
Q  202 taatgatatttgtacaactattttatgataacttttgaa 240  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  34690992 taatgatatttgtacaactattttatgataatttttgaa 34690954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 5068690 - 5068653
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaa 240  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  5068690 aatgatatttgtacaaccattttatgataacttttgaa 5068653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 26153650 - 26153686
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttga 239  Q
    ||||||||||||||||||||||||||| |||||||||    
T  26153650 aatgatatttgtacaactattttatgacaacttttga 26153686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 40760835 - 40760795
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    |||||||||| |||||||||||| |||||||||||||||||    
T  40760835 aatgatatttatacaactattttgtgataacttttgaacaa 40760795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 243
Target Start/End: Complemental strand, 677837 - 677802
Alignment:
Q  208 tatttgtacaactattttatgataacttttgaacaa 243  Q
    |||||||||||||||||| |||||||||||||||||    
T  677837 tatttgtacaactattttttgataacttttgaacaa 677802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 10945026 - 10945060
Alignment:
Q  203 aatgatatttgtacaactattttatgataactttt 237  Q
    ||||||||||| |||||||||||||||||||||||    
T  10945026 aatgatatttgaacaactattttatgataactttt 10945060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 2849588 - 2849551
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaa 240  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  2849588 aatgatatttgtacaattattttttgataacttttgaa 2849551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 232
Target Start/End: Complemental strand, 10015022 - 10014993
Alignment:
Q  203 aatgatatttgtacaactattttatgataa 232  Q
    ||||||||||||||||||||||||||||||    
T  10015022 aatgatatttgtacaactattttatgataa 10014993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 11604749 - 11604709
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||  |||||||||||| ||||||||||    
T  11604749 aatgatatttgtacaaaaattttatgataatttttgaacaa 11604709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 12141907 - 12141943
Alignment:
Q  207 atatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  12141907 atatttgtacaaccattttgtgataacttttgaacaa 12141943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 22692088 - 22692128
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||| ||||||||| ||||||| |||||    
T  22692088 aatgatatttgtacaaccattttatgacaacttttaaacaa 22692128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 29763834 - 29763874
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||| ||||| |||||||||||| ||||    
T  29763834 aatgatatttgtacaaccattttgtgataacttttgtacaa 29763874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 30818064 - 30818028
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttga 239  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  30818064 aatgatatttgtacaaccattttatgacaacttttga 30818028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 37385300 - 37385260
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||||||||| ||| |||||||| ||||    
T  37385300 aatgatatttgtacaactattttttgacaacttttgtacaa 37385260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 47530358 - 47530318
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    |||||||||| |||||| ||||||||| |||||||||||||    
T  47530358 aatgatatttatacaaccattttatgacaacttttgaacaa 47530318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 21152654 - 21152691
Alignment:
Q  202 taatgatatttgtacaactattttatgataacttttga 239  Q
    |||||||||||||||||| |||||||||||||||||||    
T  21152654 taatgatatttgtacaacaattttatgataacttttga 21152691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 12074476 - 12074516
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    |||||||||| ||||||||||||||||||| ||||||||||    
T  12074476 aatgatatttatacaactattttatgataatttttgaacaa 12074516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 24088631 - 24088591
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||| ||||||||| |||||||||||||    
T  24088631 aatgatatttgtacaaccattttatgacaacttttgaacaa 24088591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 36444462 - 36444422
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  36444462 aatgatatttgtacaaccattttatgataactttttaacaa 36444422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 44626609 - 44626644
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttg 238  Q
    ||||||||||| ||||||||||||||||||||||||    
T  44626609 aatgatatttgaacaactattttatgataacttttg 44626644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 34114184 - 34114150
Alignment:
Q  203 aatgatatttgtacaactattttatgataactttt 237  Q
    ||||||||||||||||||||||||| |||||||||    
T  34114184 aatgatatttgtacaactattttattataactttt 34114150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 52430881 - 52430915
Alignment:
Q  203 aatgatatttgtacaactattttatgataactttt 237  Q
    ||||||||||||||||||||||||||| |||||||    
T  52430881 aatgatatttgtacaactattttatgacaactttt 52430915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 52632164 - 52632194
Alignment:
Q  207 atatttgtacaactattttatgataactttt 237  Q
    |||||||||||||||||||||||||||||||    
T  52632164 atatttgtacaactattttatgataactttt 52632194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 232
Target Start/End: Complemental strand, 32464671 - 32464642
Alignment:
Q  203 aatgatatttgtacaactattttatgataa 232  Q
    ||||||||||||||||||||||||||||||    
T  32464671 aatgatatttgtacaactattttatgataa 32464642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 3475873 - 3475913
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||| ||||||||| |||||||| ||||    
T  3475873 aatgatatttgtacaaccattttatgacaacttttgtacaa 3475913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 8455865 - 8455905
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    |||| |||||||||||||||||| ||| |||||||||||||    
T  8455865 aatgttatttgtacaactattttgtgacaacttttgaacaa 8455905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 11012145 - 11012185
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||| ||||||||| ||||||| |||||    
T  11012145 aatgatatttgtacaaccattttatgacaactttttaacaa 11012185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 19879777 - 19879817
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||  |||||||||||| ||||||||||    
T  19879777 aatgatatttgtacaatcattttatgataatttttgaacaa 19879817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 32901333 - 32901373
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||||||||| |||||| ||||| ||||    
T  32901333 aatgatatttgtacaactattttttgataatttttgcacaa 32901373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 39449177 - 39449213
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttga 239  Q
    |||||||||| |||||||||||| |||||||||||||    
T  39449177 aatgatatttatacaactattttgtgataacttttga 39449213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 44272877 - 44272837
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||||||||| ||| ||||||| |||||    
T  44272877 aatgatatttgtacaactattttttgacaacttttaaacaa 44272837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 45922014 - 45922050
Alignment:
Q  207 atatttgtacaactattttatgataacttttgaacaa 243  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  45922014 atatttgtacaattatttaatgataacttttgaacaa 45922050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 47014943 - 47014983
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||||||||| ||| ||||||| |||||    
T  47014943 aatgatatttgtacaactattttgtgacaacttttaaacaa 47014983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 21239145 - 21239108
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaa 240  Q
    |||||||||||||||||||||||||||||| |||||||    
T  21239145 aatgatatttgtacaactattttatgataatttttgaa 21239108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 1295336 - 1295376
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  1295336 aatgatatttgtacaactattttgtgataacttttggacaa 1295376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 16139358 - 16139322
Alignment:
Q  207 atatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||| |||||||||||||||||||||||    
T  16139358 atatttgtacaaccattttatgataacttttgaacaa 16139322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 36799402 - 36799442
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  36799402 aatgatatttgtacaactattttttgataacttttaaacaa 36799442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 16675901 - 16675940
Alignment:
Q  199 gggtaatgatatttgtacaactattttatgataacttttg 238  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  16675901 gggtaatgatatttgtacaattatttgatgataacttttg 16675940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 236
Target Start/End: Original strand, 49031437 - 49031472
Alignment:
Q  201 gtaatgatatttgtacaactattttatgataacttt 236  Q
    ||||||||||||||||||||||||| ||||||||||    
T  49031437 gtaatgatatttgtacaactattttgtgataacttt 49031472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 35987254 - 35987292
Alignment:
Q  205 tgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||||||| ||||||||||| |||||    
T  35987254 tgatatttgtacaactattttgtgataacttttaaacaa 35987292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 30633706 - 30633739
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttt 236  Q
    ||||||||||||||| ||||||||||||||||||    
T  30633706 aatgatatttgtacatctattttatgataacttt 30633739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 7867778 - 7867738
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||||||||| ||| ||||||| |||||    
T  7867778 aatgatatttgtacaactattttgtgacaacttttaaacaa 7867738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 22836262 - 22836222
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||| |||||||||||| |||| |||||    
T  22836262 aatgatatttgtacaaccattttatgataatttttcaacaa 22836222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 37134673 - 37134633
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||||||||||||| || |||| |||||    
T  37134673 aatgatatttgtacaactattttatgacaattttttaacaa 37134633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 43499628 - 43499588
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||| | |||||||||||||||| ||||    
T  43499628 aatgatatttgtacaaccactttatgataacttttggacaa 43499588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 41619059 - 41619096
Alignment:
Q  202 taatgatatttgtacaactattttatgataacttttga 239  Q
    |||||||||||||||||||||||| |||||||||||||    
T  41619059 taatgatatttgtacaactattttttgataacttttga 41619096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 26585240 - 26585200
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  26585240 aatgatatttgtacaactattttgtgataacttttgtacaa 26585200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 34395986 - 34395946
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  34395986 aatgatatttgtacatctattttatgacaacttttgaacaa 34395946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 29706770 - 29706735
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttg 238  Q
    ||||||||||||||||| ||||||||||||||||||    
T  29706770 aatgatatttgtacaaccattttatgataacttttg 29706735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 52261343 - 52261376
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttt 236  Q
    ||||||||||| ||||||||||||||||||||||    
T  52261343 aatgatatttgaacaactattttatgataacttt 52261376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 7078567 - 7078527
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||| ||||||| ||| |||||||||||||    
T  7078567 aatgatatttgtacatctattttgtgacaacttttgaacaa 7078527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 26839386 - 26839426
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    |||| |||||||||||| |||||||||||||||||| ||||    
T  26839386 aatggtatttgtacaaccattttatgataacttttgtacaa 26839426  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 27352634 - 27352674
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||| ||||| |||||||||||| ||||    
T  27352634 aatgatatttgtacaaccattttgtgataacttttggacaa 27352674  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 31184285 - 31184325
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||| ||||||||| ||||||| |||||    
T  31184285 aatgatatttgtacaaccattttatgacaactttttaacaa 31184325  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 32873345 - 32873385
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||| | |||||||||||||||||| ||||    
T  32873345 aatgatatttgtacatccattttatgataacttttgtacaa 32873385  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 38627334 - 38627370
Alignment:
Q  201 gtaatgatatttgtacaactattttatgataactttt 237  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  38627334 gtaatgatatttgtacatctattttgtgataactttt 38627370  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 41459803 - 41459767
Alignment:
Q  207 atatttgtacaactattttatgataacttttgaacaa 243  Q
    |||||||| |||||||||||||| |||||||||||||    
T  41459803 atatttgttcaactattttatgacaacttttgaacaa 41459767  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 49699819 - 49699779
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||| |||||||||||| |||| |||||    
T  49699819 aatgatatttgtacaaccattttatgataattttttaacaa 49699779  T

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Target: scaffold0154 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 4319 - 4353
Alignment:
Q  203 aatgatatttgtacaactattttatgataactttt 237  Q
    ||||||||||||||||| |||||||||||||||||    
T  4319 aatgatatttgtacaaccattttatgataactttt 4353  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 736887 - 736853
Alignment:
Q  203 aatgatatttgtacaactattttatgataactttt 237  Q
    |||||||||||||||||||||||||||||| ||||    
T  736887 aatgatatttgtacaactattttatgataattttt 736853  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 3401088 - 3401126
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaac 241  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  3401088 aatgatatttgtacaactattttgtgataatttttgaac 3401126  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 29172994 - 29173028
Alignment:
Q  203 aatgatatttgtacaactattttatgataactttt 237  Q
    ||||||||||||||||| |||||||||||||||||    
T  29172994 aatgatatttgtacaaccattttatgataactttt 29173028  T

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Target: scaffold0662 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 1082 - 1122
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    ||||||||||||||||||||||| ||| ||||||| |||||    
T  1082 aatgatatttgtacaactattttgtgacaacttttaaacaa 1122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 8042 - 8002
Alignment:
Q  203 aatgatatttgtacaactattttatgataacttttgaacaa 243  Q
    |||||||||| |||||| ||||||||| |||||||||||||    
T  8042 aatgatatttatacaaccattttatgacaacttttgaacaa 8002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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