View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8771_high_12 (Length: 250)
Name: NF8771_high_12
Description: NF8771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8771_high_12 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 83 - 250
Target Start/End: Complemental strand, 49248541 - 49248374
Alignment:
| Q |
83 |
gggagacaattaagcctgagaagggaggcaatgtattaataatgcaaagcaagcaaaaaatatgtttaagttctgtggttatttcaatcattgttgactt |
182 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49248541 |
gggagataattaagcctgagaagggaggcaatgtattaataatgcaaagcaagcaaaaaatatgtttaagttctgtggttatttcaatcattgttgactt |
49248442 |
T |
|
| Q |
183 |
ggagttggtactgttggtcaagactatgggaactttacttccacaagcttgttgcaataatttttcct |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
49248441 |
ggagttggtactgttggtcaagactatgggaactttacttccacaagcttgttgcaatcatttttcct |
49248374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 49249951 - 49249865
Alignment:
| Q |
1 |
gaaacataagcagggagagaagtaatgatttgaaaatgtgaaggtaggacattagtaatttcaagaattttaatctggctaggggag |
87 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49249951 |
gaaacataagcagggagagaagtaatgatttgaaaatgtgaaggtaggacattagtaatttcaagaattttaatctggctaggggag |
49249865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University