View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8771_high_13 (Length: 245)
Name: NF8771_high_13
Description: NF8771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8771_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 50554372 - 50554614
Alignment:
| Q |
1 |
atcatatcaaagggacagcaagtggttcatcggatccatccgatgaagataatgaatcaggtccttgtgaacaaattacaaatccagttgatatgaaacg |
100 |
Q |
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| T |
50554372 |
atcatatcaaagggacagcaagtggttcatcggatccatccgatgaagataatgaatcaggtccttgtgaacaaattacaaatccagttgatatgaaacg |
50554471 |
T |
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| Q |
101 |
ccaaagaaggtatttccgtctaac----------------ttcttattatatgtggttttcaaattatgatataataatgattcatgacatggtttcagg |
184 |
Q |
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| T |
50554472 |
ccaaagaaggtatttccgtctaactttaaatacaacacttttcttattatatttggttttcaaattatgatataataatgattcatgacatggtttcagg |
50554571 |
T |
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| Q |
185 |
aaggattctaattgcgagtcagccaggaggtcaaggtggagaa |
227 |
Q |
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| T |
50554572 |
aaggattctaattgcgagtcagccaggaggtcaaggtggagaa |
50554614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 50816972 - 50817040
Alignment:
| Q |
159 |
ataatgattcatgacatggtttcaggaaggattctaattgcgagtcagccaggaggtcaaggtggagaa |
227 |
Q |
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| T |
50816972 |
ataatgattcatgacatggtttcaggaaggtttcaaatcccaagtcagccaggagatcaaggcggagaa |
50817040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 50858892 - 50858824
Alignment:
| Q |
159 |
ataatgattcatgacatggtttcaggaaggattctaattgcgagtcagccaggaggtcaaggtggagaa |
227 |
Q |
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| T |
50858892 |
ataatgattcatgacatggtttcaggaaggtttcaaatcccaagtcagccaggagatcaaggcggagaa |
50858824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 1131584 - 1131520
Alignment:
| Q |
33 |
gatccatccgatgaagataatgaatcaggtccttgtgaacaaattacaaatccagttgatatgaa |
97 |
Q |
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| T |
1131584 |
gatccatctgatgaagatgatgaagcaggtccttgtgaacaaagtacaaaccctgttgatatgaa |
1131520 |
T |
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