View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8771_high_14 (Length: 244)

Name: NF8771_high_14
Description: NF8771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8771_high_14
NF8771_high_14
[»] chr4 (3 HSPs)
chr4 (30-229)||(53328594-53328793)
chr4 (45-229)||(22898448-22898632)
chr4 (45-229)||(22950116-22950300)
[»] chr5 (1 HSPs)
chr5 (30-226)||(26358654-26358850)
[»] chr7 (2 HSPs)
chr7 (45-229)||(39954948-39955132)
chr7 (63-193)||(10575300-10575430)
[»] chr2 (1 HSPs)
chr2 (45-226)||(41027467-41027648)
[»] chr3 (7 HSPs)
chr3 (96-193)||(24920025-24920122)
chr3 (48-193)||(24923599-24923744)
chr3 (48-193)||(24497398-24497543)
chr3 (45-193)||(24981941-24982089)
chr3 (48-194)||(31825695-31825841)
chr3 (90-193)||(25084978-25085081)
chr3 (48-229)||(21584700-21584881)
[»] chr8 (1 HSPs)
chr8 (63-196)||(14261168-14261301)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 30 - 229
Target Start/End: Original strand, 53328594 - 53328793
Alignment:
Q  30 atgtcaggaagaggcaaaggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctg 129  Q
    |||||||||||||||||||||||||||||| | |||||||| ||||| ||||||||||||||||| || || ||||||||||| ||||||||||||||||    
T  53328594 atgtcaggaagaggcaaaggaggaaagggtttaggaaagggtggagcgaaacgacaccgtaaggttctgcgcgataacatccagggaatcacaaagcctg 53328693  T
Q  130 caattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgat 229  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53328694 cgattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgat 53328793  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 229
Target Start/End: Original strand, 22898448 - 22898632
Alignment:
Q  45 aaaggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcg 144  Q
    ||||| ||||||||| | |||||||| |||||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||| || ||||||||||| |    
T  22898448 aaaggtggaaagggtttgggaaagggtggagcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgtcgtcttg 22898547  T
Q  145 caagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgat 229  Q
    |  |  | || || ||||||||||||||||| || || ||||| || || ||||||||  | ||||| ||| | |||||||||||    
T  22898548 ctcgtagaggaggagtgaagcgtatcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgat 22898632  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 229
Target Start/End: Original strand, 22950116 - 22950300
Alignment:
Q  45 aaaggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcg 144  Q
    ||||| ||||||||| | |||||||| |||||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||| || ||||||||||| |    
T  22950116 aaaggtggaaagggtttgggaaagggtggagcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgtcgtcttg 22950215  T
Q  145 caagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgat 229  Q
    |  |  | || || ||||||||||||||||| || || ||||| || || ||||||||  | ||||| ||| | |||||||||||    
T  22950216 ctcgtagaggaggagtgaagcgtatcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgat 22950300  T

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Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 226
Target Start/End: Complemental strand, 26358850 - 26358654
Alignment:
Q  30 atgtcaggaagaggcaaaggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctg 129  Q
    |||||||||||||| ||||||||||||||| | |||||||| || ||||| || || || || || ||||| |||||||| || ||||| || || || |    
T  26358850 atgtcaggaagaggaaaaggaggaaagggtttaggaaagggtggtgcaaagcgtcatcgcaaagttcttcgagataacattcagggaattaccaaacccg 26358751  T
Q  130 caattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgt 226  Q
    | ||||||||||| ||||| ||||||||||| || |||||||||||  | |||||||||||||||||||| ||||||||||| ||||||||||||||    
T  26358750 cgattcgtcgtcttgcaaggcgtggtggtgtaaaacgtatcagtggtctgatctatgaagaaactcgtggtgttctcaagatatttcttgagaatgt 26358654  T

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Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 45 - 229
Target Start/End: Complemental strand, 39955132 - 39954948
Alignment:
Q  45 aaaggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcg 144  Q
    ||||||||||||||  | |||||||||||||||||  | ||| | ||||| ||||| || ||||||||||| || || |||||||| ||||||||||| |    
T  39955132 aaaggaggaaagggattgggaaagggaggagcaaagaggcacagaaaggttcttcgcgacaacatccaaggcataaccaagcctgcgattcgtcgtcttg 39955033  T
Q  145 caagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgat 229  Q
    |||| ||||||||||||||| | ||||| ||  | ||||| ||||| ||||| || |||||||||||||||||||||||||||||    
T  39955032 caaggcgtggtggtgtgaagagaatcagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgtgat 39954948  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 193
Target Start/End: Original strand, 10575300 - 10575430
Alignment:
Q  63 ggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtga 162  Q
    |||||||| || |||||  |||| || ||||| || ||||| ||||||||||||||||||||||| || ||||||||  | || ||| | || |||||||    
T  10575300 ggaaaggggggtgcaaagagacatcgcaaggttctccgtgacaacatccaaggaatcacaaagccagcgattcgtcgattggcgagaagaggaggtgtga 10575399  T
Q  163 agcgtatcagtggcttaatctatgaagaaac 193  Q
    |  | |||||||| || |||||||| |||||    
T  10575400 aaagaatcagtggattgatctatgaggaaac 10575430  T

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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 45 - 226
Target Start/End: Original strand, 41027467 - 41027648
Alignment:
Q  45 aaaggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcg 144  Q
    ||||| ||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| ||||||||| | |    
T  41027467 aaaggtggaaagggattgggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacattcaaggaattacgaagcctgcgattcgtcgtttgg 41027566  T
Q  145 caagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgt 226  Q
    || |  | || || ||||||||||| || || || ||||| ||||| || ||||||||  | ||||||||| | ||||||||    
T  41027567 cacgtagaggaggagtgaagcgtataagcggtttgatctacgaagagacacgtggcgtgttgaagatctttttggagaatgt 41027648  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 24920122 - 24920025
Alignment:
Q  96 cttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaac 193  Q
    ||||||||||||||||| || ||||| |||||||||||||||||  | |||||| | |||||||||||| | ||||| || || ||||||||||||||    
T  24920122 cttcgtgataacatccagggtatcaccaagcctgcaattcgtcgattggcaagaagaggtggtgtgaagagaatcagcggtttgatctatgaagaaac 24920025  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 193
Target Start/End: Complemental strand, 24923744 - 24923599
Alignment:
Q  48 ggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaa 147  Q
    ||||| ||||| || ||||||||||| |||||  | ||  | ||||| ||||||||||||||||| || ||||| |||||||| ||||||||  | ||||    
T  24923744 ggaggtaagggactcggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattggcaa 24923645  T
Q  148 gacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaac 193  Q
    || | |||||||| ||| | |||||||| || ||||||||||||||    
T  24923644 gaagaggtggtgttaagagaatcagtggtttgatctatgaagaaac 24923599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 193
Target Start/End: Complemental strand, 24497543 - 24497398
Alignment:
Q  48 ggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaa 147  Q
    ||||| ||||| || ||||||||||| |||||  | ||  | ||||| |||||||| |||||||| || ||||| |||||||| ||||||||  | ||||    
T  24497543 ggaggtaagggactcggaaagggaggtgcaaagaggcataggaaggttcttcgtgacaacatccagggtatcaccaagcctgctattcgtcgattggcaa 24497444  T
Q  148 gacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaac 193  Q
    || | |||||||| ||| | |||||||| || ||||||||||||||    
T  24497443 gaagaggtggtgttaagagaatcagtggattgatctatgaagaaac 24497398  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 193
Target Start/End: Original strand, 24981941 - 24982089
Alignment:
Q  45 aaaggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcg 144  Q
    |||||||| ||||| || ||||||||||| |||||  | ||  | || || ||||||||||||||||| || ||||| |||||||| ||||||||  | |    
T  24981941 aaaggaggtaagggactaggaaagggaggtgcaaagaggcataggaaagttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattgg 24982040  T
Q  145 caagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaac 193  Q
    ||||| | |||||||| ||| | |||||||| || || |||||||||||    
T  24982041 caagaagaggtggtgttaagagaatcagtggtttgatatatgaagaaac 24982089  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 194
Target Start/End: Complemental strand, 31825841 - 31825695
Alignment:
Q  48 ggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaa 147  Q
    ||||| ||||| || ||||||||||| |||||| | ||| | || || || || || |||||||| || ||||| |||||||| ||||||||  | || |    
T  31825841 ggaggtaaggggctaggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaacatccagggtatcactaagcctgccattcgtcgattggcga 31825742  T
Q  148 gacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaact 194  Q
    || | |||||||||||| | |||||||| || |||||||||||||||    
T  31825741 gaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaact 31825695  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 25084978 - 25085081
Alignment:
Q  90 aaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaag 189  Q
    ||||| ||||||||||||||||| || ||||| |||||||| |||||| |  | || ||| | |||||||||||| | |||||||| || || |||||||    
T  25084978 aaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtagattggcgagaagaggtggtgtgaagagaatcagtggtttgatatatgaag 25085077  T
Q  190 aaac 193  Q
    ||||    
T  25085078 aaac 25085081  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 229
Target Start/End: Complemental strand, 21584881 - 21584700
Alignment:
Q  48 ggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaa 147  Q
    ||||| ||||| || ||||||||||| |||||  ||||| | || || |||||||||||||| || |||||||| ||||| || ||||||||  | || |    
T  21584881 ggaggtaagggactaggaaagggaggtgcaaagagacacaggaaagttcttcgtgataacattcagggaatcaccaagccagcgattcgtcgattggcga 21584782  T
Q  148 gacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttg-agaatgtgat 229  Q
    || | |||||||| ||| | |||||||| || || ||||| |||||  | || ||||| ||||| ||||||| ||||||||||    
T  21584781 gaagaggtggtgttaagagaatcagtggtttgatttatgaggaaacaagaggagttcttaagat-tttcttggagaatgtgat 21584700  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 196
Target Start/End: Complemental strand, 14261301 - 14261168
Alignment:
Q  63 ggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtga 162  Q
    ||||||||||| |||||  |||| || || ||||||||||| ||||||||||||||||||||||| || ||||| ||  | || ||| | || |||||||    
T  14261301 ggaaagggaggtgcaaagagacatcgcaaagtgcttcgtgacaacatccaaggaatcacaaagccagcgattcggcgattagcgagaagaggaggtgtga 14261202  T
Q  163 agcgtatcagtggcttaatctatgaagaaactcg 196  Q
    || | ||||| || || || ||||||||||||||    
T  14261201 agagaatcagcgggttgatttatgaagaaactcg 14261168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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