View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8771_high_15 (Length: 243)
Name: NF8771_high_15
Description: NF8771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8771_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 50412420 - 50412191
Alignment:
| Q |
1 |
cttattatcacaccaaagtcctttttgctgcaatggcaaagctctgtcagatatgaaaatcatctatctgcaggatgtgcatgtgtgcacgtcttcatgt |
100 |
Q |
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| T |
50412420 |
cttattatcacaccaaagtcctttttgctgcaatggcaaagctctgtcagatatgaaaatcatcgatctgcaggatgtgcatgtgtgcacgtcttcatgt |
50412321 |
T |
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| Q |
101 |
tcgtgtgtgcgtnnnnnnnnnnnnnnngagcgaatttgtatgatataatgaatgctaagtttaacaaaaacttaccgaaaacgcacaagagcatataatt |
200 |
Q |
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| T |
50412320 |
tcgtgtgtgcgtgagagagagagagaggagcgaatttgtatgatataatgaatgctaagtttaacaaaaacttaccgaaaacgcacaagagcatataatt |
50412221 |
T |
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| Q |
201 |
caaaatcatttcctgcgcccgaagctgatg |
230 |
Q |
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| T |
50412220 |
caaaatcatttcctgcgcctgaagctgatg |
50412191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 25797563 - 25797465
Alignment:
| Q |
129 |
agcgaatttgtatgatataatgaatgctaagtttaacaaaaa-cttaccgaaaacgcacaagagcatataattcaaaatcatttcctgcgcccgaagct |
226 |
Q |
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| T |
25797563 |
agcgaatttgtatgatataatgaatgctaaatttaacaaaaaacttaccgaaaacgcacaagagcatataactcaaaatcatttcctgcgcccgaagct |
25797465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 25797694 - 25797607
Alignment:
| Q |
22 |
tttttgctgcaatggcaaagctctgtcagatatgaaaatcatctatctgcaggatgtgcatgtgtgcacgtcttcatgttcgtgtgtg |
109 |
Q |
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| T |
25797694 |
tttttgctgcaatggcaaagctctatcagacatgaaaatcatggatctgcaagatgtgcatgtgtgcacatctgcatgtgtgtgtgtg |
25797607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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