View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8771_high_4 (Length: 387)

Name: NF8771_high_4
Description: NF8771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8771_high_4
NF8771_high_4
[»] chr6 (17 HSPs)
chr6 (156-310)||(9024294-9024445)
chr6 (1-40)||(8479309-8479348)
chr6 (1-45)||(15360259-15360303)
chr6 (1-40)||(9238972-9239011)
chr6 (1-40)||(12591634-12591673)
chr6 (1-40)||(22576064-22576103)
chr6 (1-40)||(28672064-28672103)
chr6 (1-40)||(34147343-34147382)
chr6 (1-40)||(34159959-34159998)
chr6 (1-43)||(9843932-9843974)
chr6 (3-40)||(3222797-3222834)
chr6 (3-40)||(21982483-21982520)
chr6 (1-37)||(11448871-11448907)
chr6 (1-40)||(654307-654346)
chr6 (1-40)||(13753237-13753276)
chr6 (1-40)||(21148671-21148710)
chr6 (1-40)||(33499471-33499510)
[»] chr5 (27 HSPs)
chr5 (1-43)||(25750772-25750814)
chr5 (1-40)||(19145572-19145611)
chr5 (1-44)||(38631122-38631165)
chr5 (1-43)||(4603771-4603813)
chr5 (1-43)||(8484822-8484864)
chr5 (1-40)||(13108610-13108649)
chr5 (1-40)||(22392698-22392737)
chr5 (1-40)||(23270683-23270722)
chr5 (1-40)||(25586929-25586968)
chr5 (1-40)||(32059601-32059640)
chr5 (1-40)||(36954815-36954854)
chr5 (1-43)||(27487716-27487758)
chr5 (1-40)||(11926663-11926702)
chr5 (1-40)||(12317311-12317350)
chr5 (1-40)||(13038615-13038654)
chr5 (1-40)||(15641266-15641305)
chr5 (1-40)||(15931056-15931095)
chr5 (4-43)||(22253309-22253348)
chr5 (1-40)||(25343236-25343275)
chr5 (1-40)||(31288107-31288146)
chr5 (1-36)||(38684209-38684244)
chr5 (1-43)||(10399767-10399809)
chr5 (1-31)||(42193491-42193521)
chr5 (1-38)||(2499339-2499376)
chr5 (1-38)||(3715070-3715107)
chr5 (4-40)||(5067298-5067334)
chr5 (1-33)||(33709662-33709694)
[»] scaffold0068 (1 HSPs)
scaffold0068 (1-40)||(41805-41844)
[»] chr8 (25 HSPs)
chr8 (1-40)||(42643279-42643318)
chr8 (1-45)||(3734784-3734828)
chr8 (1-40)||(2618187-2618226)
chr8 (1-40)||(4718646-4718685)
chr8 (1-40)||(18532108-18532147)
chr8 (1-40)||(19471610-19471649)
chr8 (1-40)||(19542534-19542573)
chr8 (1-40)||(19590123-19590162)
chr8 (1-44)||(27746496-27746539)
chr8 (1-40)||(34237816-34237855)
chr8 (1-40)||(42328006-42328045)
chr8 (1-43)||(34694737-34694779)
chr8 (1-35)||(41070767-41070801)
chr8 (1-38)||(28193477-28193514)
chr8 (4-40)||(20305909-20305945)
chr8 (4-40)||(21092542-21092578)
chr8 (4-40)||(32879280-32879316)
chr8 (1-40)||(28088287-28088326)
chr8 (1-44)||(34639367-34639410)
chr8 (1-40)||(39349257-39349296)
chr8 (1-43)||(8042652-8042694)
chr8 (1-43)||(15259567-15259609)
chr8 (9-43)||(36848918-36848952)
chr8 (4-41)||(8387608-8387645)
chr8 (1-38)||(24018385-24018422)
[»] chr3 (27 HSPs)
chr3 (1-40)||(21362940-21362979)
chr3 (4-43)||(25344221-25344260)
chr3 (1-40)||(48977385-48977424)
chr3 (1-40)||(7485686-7485725)
chr3 (1-40)||(18177048-18177087)
chr3 (1-40)||(30257621-30257660)
chr3 (1-40)||(30807314-30807353)
chr3 (1-40)||(34492736-34492775)
chr3 (1-40)||(35492908-35492947)
chr3 (1-40)||(45529915-45529954)
chr3 (1-40)||(46576345-46576384)
chr3 (1-40)||(53424337-53424376)
chr3 (1-38)||(25379760-25379797)
chr3 (1-38)||(52821796-52821833)
chr3 (4-40)||(8456314-8456350)
chr3 (1-33)||(32151428-32151460)
chr3 (1-40)||(4252557-4252596)
chr3 (1-40)||(7470376-7470415)
chr3 (1-40)||(25289875-25289914)
chr3 (1-40)||(31537999-31538038)
chr3 (1-40)||(40133610-40133649)
chr3 (1-40)||(40940822-40940861)
chr3 (1-40)||(45272577-45272616)
chr3 (1-40)||(50582989-50583028)
chr3 (1-40)||(52455810-52455849)
chr3 (1-39)||(4462631-4462669)
chr3 (3-40)||(49258425-49258462)
[»] chr1 (24 HSPs)
chr1 (1-40)||(46607807-46607846)
chr1 (1-42)||(52135125-52135166)
chr1 (4-39)||(2272342-2272377)
chr1 (1-40)||(4621398-4621437)
chr1 (1-40)||(7197407-7197446)
chr1 (1-40)||(8077644-8077683)
chr1 (1-40)||(24216975-24217014)
chr1 (1-40)||(24674390-24674429)
chr1 (1-40)||(34778339-34778378)
chr1 (3-40)||(23232428-23232465)
chr1 (4-40)||(32729542-32729578)
chr1 (1-40)||(1486417-1486456)
chr1 (1-40)||(14258588-14258627)
chr1 (1-40)||(15059563-15059602)
chr1 (1-40)||(16899508-16899547)
chr1 (1-40)||(27455027-27455066)
chr1 (1-40)||(29057498-29057537)
chr1 (1-40)||(47091687-47091726)
chr1 (1-39)||(1378743-1378781)
chr1 (1-43)||(46113563-46113605)
chr1 (1-38)||(1095156-1095193)
chr1 (2-39)||(24122021-24122058)
chr1 (4-40)||(168198-168234)
chr1 (4-40)||(2537701-2537737)
[»] chr4 (24 HSPs)
chr4 (1-43)||(20566343-20566385)
chr4 (1-40)||(5609363-5609402)
chr4 (1-40)||(25852211-25852250)
chr4 (1-40)||(32986194-32986233)
chr4 (1-40)||(40059013-40059052)
chr4 (4-39)||(42245744-42245779)
chr4 (1-40)||(46714389-46714428)
chr4 (1-40)||(54127503-54127542)
chr4 (1-39)||(51535611-51535649)
chr4 (1-40)||(1985833-1985872)
chr4 (1-36)||(10125783-10125818)
chr4 (1-40)||(13873456-13873495)
chr4 (1-40)||(19660693-19660732)
chr4 (1-40)||(22625231-22625270)
chr4 (1-40)||(33696440-33696479)
chr4 (1-40)||(35674902-35674941)
chr4 (1-40)||(52983616-52983655)
chr4 (5-43)||(13550202-13550240)
chr4 (1-39)||(45787864-45787902)
chr4 (1-42)||(17415676-17415717)
chr4 (1-38)||(34722169-34722206)
chr4 (1-42)||(40252293-40252334)
chr4 (1-33)||(35229172-35229204)
chr4 (1-37)||(55961903-55961939)
[»] scaffold0576 (1 HSPs)
scaffold0576 (1-45)||(5243-5287)
[»] chr7 (32 HSPs)
chr7 (1-45)||(2751267-2751311)
chr7 (1-40)||(2103056-2103095)
chr7 (1-40)||(2344300-2344339)
chr7 (1-40)||(7176023-7176062)
chr7 (1-40)||(7275278-7275317)
chr7 (1-40)||(8435856-8435895)
chr7 (1-40)||(18044108-18044147)
chr7 (1-40)||(21217994-21218033)
chr7 (1-40)||(23854397-23854436)
chr7 (1-40)||(32849592-32849631)
chr7 (1-40)||(40543071-40543110)
chr7 (1-39)||(13332584-13332622)
chr7 (1-39)||(22119890-22119928)
chr7 (1-43)||(28089814-28089856)
chr7 (1-38)||(27312155-27312192)
chr7 (1-38)||(28646972-28647009)
chr7 (1-40)||(7799993-7800032)
chr7 (1-40)||(10091189-10091228)
chr7 (1-40)||(12211696-12211735)
chr7 (1-40)||(17212054-17212093)
chr7 (1-40)||(21370598-21370637)
chr7 (1-40)||(25333420-25333459)
chr7 (1-40)||(27009360-27009399)
chr7 (1-40)||(31197592-31197631)
chr7 (1-40)||(31713056-31713095)
chr7 (1-40)||(39145813-39145852)
chr7 (1-39)||(1469114-1469152)
chr7 (5-43)||(9683824-9683862)
chr7 (1-43)||(21835149-21835191)
chr7 (1-39)||(22696322-22696360)
chr7 (1-38)||(42814867-42814904)
chr7 (4-40)||(22638293-22638329)
[»] scaffold0199 (1 HSPs)
scaffold0199 (1-40)||(8568-8607)
[»] chr2 (15 HSPs)
chr2 (1-40)||(8192512-8192551)
chr2 (1-40)||(15037956-15037995)
chr2 (1-40)||(18976586-18976625)
chr2 (1-40)||(33827734-33827773)
chr2 (2-39)||(44976316-44976353)
chr2 (3-43)||(4567600-4567640)
chr2 (1-40)||(11941371-11941410)
chr2 (1-40)||(25293163-25293202)
chr2 (1-40)||(44946214-44946253)
chr2 (1-39)||(4852556-4852594)
chr2 (2-40)||(24196001-24196039)
chr2 (3-40)||(14946776-14946813)
chr2 (3-43)||(12983963-12984003)
chr2 (4-40)||(20297560-20297596)
chr2 (4-40)||(27269514-27269550)
[»] scaffold0623 (1 HSPs)
scaffold0623 (1-39)||(1217-1255)
[»] scaffold0459 (1 HSPs)
scaffold0459 (1-39)||(10854-10892)
[»] scaffold0366 (2 HSPs)
scaffold0366 (1-39)||(9460-9498)
scaffold0366 (1-39)||(12161-12199)
[»] scaffold0240 (1 HSPs)
scaffold0240 (1-38)||(12915-12952)
[»] scaffold0026 (1 HSPs)
scaffold0026 (3-40)||(97529-97566)
[»] scaffold0328 (1 HSPs)
scaffold0328 (1-40)||(14988-15027)
[»] scaffold0070 (1 HSPs)
scaffold0070 (1-40)||(40322-40361)
[»] scaffold0051 (1 HSPs)
scaffold0051 (1-40)||(53032-53071)
[»] scaffold0217 (1 HSPs)
scaffold0217 (1-38)||(7470-7507)


Alignment Details
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 310
Target Start/End: Original strand, 9024294 - 9024445
Alignment:
Q  156 gttgtttcattaattaaaccaaaaatgaattatcaatttgtaaattgggaagtaatgtgtttggtgatttcattatgtattggaagttgaggtcaatcca 255  Q
    |||| |||||||||||| |||||||  ||| ||||  ||| ||||| || || |||||||| || ||||| |||| | ||||||||||||||| ||| ||    
T  9024294 gttggttcattaattaacccaaaaagaaatgatca--ttgaaaattagggagcaatgtgttaggagattttattaagcattggaagttgaggtgaatgca 9024391  T
Q  256 ctattgagcatttgagcaatttgtgtagttgcgtcaattggagttatatggtagc 310  Q
    | |||||||| ||| |||||| ||||||||| |||||||  ||||||||||||||    
T  9024392 ccattgagcacttgggcaattggtgtagttgggtcaatt-aagttatatggtagc 9024445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 8479348 - 8479309
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8479348 tccaagatcccaagtcaaccactaggccaaccccaaatgg 8479309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 15360259 - 15360303
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatggattcg 45  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||    
T  15360259 tccaagatcccaagccaaccactaggccaaccccaaatgggttcg 15360303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9239011 - 9238972
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  9239011 tccaagatcccaagccaaccactaggccaaccccaaatgg 9238972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 12591673 - 12591634
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  12591673 tccaagatcccaagccaaccactaggccaaccccaaatgg 12591634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 22576103 - 22576064
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  22576103 tccaagatcccaagccaaccactaggccaaccccaaatgg 22576064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28672103 - 28672064
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  28672103 tccaagatctcaagtcaaccactaggccaaccccaaatgg 28672064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 34147382 - 34147343
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  34147382 tccaagatcccaagccaaccactaggccaaccccaaatgg 34147343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 34159998 - 34159959
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  34159998 tccaagatcccaagccaaccactaggccaaccccaaatgg 34159959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 9843974 - 9843932
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatggatt 43  Q
    |||||||||||||| |||||||||| |||||||||||||||||    
T  9843974 tccaagatcccaagccaaccactagaccaaccccaaatggatt 9843932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 3222797 - 3222834
Alignment:
Q  3 caagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||| |||||||||||||||||||||||||    
T  3222797 caagatcccaagccaaccactaggccaaccccaaatgg 3222834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 21982483 - 21982520
Alignment:
Q  3 caagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||| |||||||||||||||||||||||||    
T  21982483 caagatcccaagccaaccactaggccaaccccaaatgg 21982520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 11448907 - 11448871
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaa 37  Q
    |||||||||||||| ||||||||||||||||||||||    
T  11448907 tccaagatcccaagccaaccactaggccaaccccaaa 11448871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 654307 - 654346
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  654307 tccaagatcccaagtcagccactaggccaaacccaaatgg 654346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 13753276 - 13753237
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  13753276 tccaagatccaaagccaaccactaggccaaccccaaatgg 13753237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 21148671 - 21148710
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||| ||||||||    
T  21148671 tccaagatcccaagccaaccactaggccaactccaaatgg 21148710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 33499510 - 33499471
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| ||||||| |||||||||||||||||    
T  33499510 tccaagatcccaagccaaccaccaggccaaccccaaatgg 33499471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 25750772 - 25750814
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatggatt 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  25750772 tccaagatcccaagtcaaccactaggccaaccccaaatggatt 25750814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 19145572 - 19145611
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19145572 tccaagatcccaagtcaaccactaggccaaccccaaatgg 19145611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 38631122 - 38631165
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatggattc 44  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  38631122 tccaagatcccaagccaaccactaggccaaccccaaatggattc 38631165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 4603813 - 4603771
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatggatt 43  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  4603813 tccaagatcccaagccaaccactaggccaaccccaaatggatt 4603771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 8484822 - 8484864
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatggatt 43  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  8484822 tccaagatcccaagccaaccactaggccaaccccaaatggatt 8484864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 13108610 - 13108649
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  13108610 tccaagatcccaagccaaccactaggccaaccccaaatgg 13108649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 22392737 - 22392698
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  22392737 tccaagatcccaagccaaccactaggccaaccccaaatgg 22392698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 23270683 - 23270722
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  23270683 tccaagatcccaagccaaccactaggccaaccccaaatgg 23270722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25586968 - 25586929
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  25586968 tccaagatcccaagccaaccactaggccaaccccaaatgg 25586929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 32059601 - 32059640
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  32059601 tccaagatcccaagccaaccactaggccaaccccaaatgg 32059640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 36954854 - 36954815
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  36954854 tccaagatcccaaggcaaccactaggccaaccccaaatgg 36954815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 27487716 - 27487758
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatggatt 43  Q
    ||||| ||||||| |||||||||||||||||||||||||||||    
T  27487716 tccaaaatcccaaatcaaccactaggccaaccccaaatggatt 27487758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 11926663 - 11926702
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  11926663 tccaagatcccaaaccaaccactaggccaaccccaaatgg 11926702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 12317311 - 12317350
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||| ||||| |||||||||||||||||||||||||    
T  12317311 tccaagattccaagccaaccactaggccaaccccaaatgg 12317350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 13038615 - 13038654
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  13038615 tccaagatcccaaaccaaccactaggccaaccccaaatgg 13038654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 15641266 - 15641305
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  15641266 tccaagatcccaagccaaccactaggctaaccccaaatgg 15641305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 15931095 - 15931056
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  15931095 tccaagatcccaagctaaccactaggccaaccccaaatgg 15931056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 22253309 - 22253348
Alignment:
Q  4 aagatcccaagtcaaccactaggccaaccccaaatggatt 43  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  22253309 aagatcccaagccaaccactagaccaaccccaaatggatt 22253348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25343275 - 25343236
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  25343275 tccaagatttcaagtcaaccactaggccaaccccaaatgg 25343236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 31288107 - 31288146
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  31288107 tccaagatcccaagccaaccactaggccaacccaaaatgg 31288146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 38684244 - 38684209
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  38684244 tccaagatcccaagtcaaccactgggccaaccccaa 38684209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 10399809 - 10399767
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatggatt 43  Q
    |||||||||| |||||||||||||| ||||| |||||||||||    
T  10399809 tccaagatccaaagtcaaccactagaccaacaccaaatggatt 10399767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 42193521 - 42193491
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaac 31  Q
    |||||||||||||||||||||||||||||||    
T  42193521 tccaagatcccaagtcaaccactaggccaac 42193491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2499339 - 2499376
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaat 38  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  2499339 tccaagatcccaagtcagccactaagccaaccccaaat 2499376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3715070 - 3715107
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaat 38  Q
    |||||||||||||  |||||||||||||||||||||||    
T  3715070 tccaagatcccaaaccaaccactaggccaaccccaaat 3715107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 5067334 - 5067298
Alignment:
Q  4 aagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  5067334 aagatcccaagtcaaccactagaccaactccaaatgg 5067298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 33709662 - 33709694
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccc 33  Q
    |||||||||||||| ||||||||||||||||||    
T  33709662 tccaagatcccaagccaaccactaggccaaccc 33709694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 41805 - 41844
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41805 tccaagatcccaagtcaaccactaggccaaccccaaatgg 41844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 42643279 - 42643318
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42643279 tccaagatcccaagtcaaccactaggccaaccccaaatgg 42643318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3734784 - 3734828
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatggattcg 45  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||    
T  3734784 tccaagatcccaagccaaccactaggccaaccccaaatgggttcg 3734828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 2618226 - 2618187
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  2618226 tccaagatcccaagccaaccactaggccaaccccaaatgg 2618187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 4718685 - 4718646
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  4718685 tccaagatcccaagccaaccactaggccaaccccaaatgg 4718646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 18532147 - 18532108
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  18532147 tccaagatcccaagccaaccactaggccaaccccaaatgg 18532108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 19471649 - 19471610
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  19471649 tccaagatcccaagccaaccactaggccaaccccaaatgg 19471610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 19542573 - 19542534
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  19542573 tccaagatcccaagccaaccactaggccaaccccaaatgg 19542534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 19590123 - 19590162
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  19590123 tccaagatcccaagccaaccactaggccaaccccaaatgg 19590162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 27746496 - 27746539
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatggattc 44  Q
    |||||||||||||  |||||||||||||||||||||||||||||    
T  27746496 tccaagatcccaaaccaaccactaggccaaccccaaatggattc 27746539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 34237816 - 34237855
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  34237816 tccaagatcccaagccaaccactaggccaaccccaaatgg 34237855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 42328045 - 42328006
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  42328045 tccaagatcccaagccaaccactaggccaaccccaaatgg 42328006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 34694737 - 34694779
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatggatt 43  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  34694737 tccaagatcacaagtcaaccactagaccaaccccaaatggatt 34694779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 41070801 - 41070767
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaacccca 35  Q
    |||||||||||||||||||||||||||||||||||    
T  41070801 tccaagatcccaagtcaaccactaggccaacccca 41070767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28193514 - 28193477
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaat 38  Q
    |||||||||||||| |||||||||||||||||||||||    
T  28193514 tccaagatcccaagccaaccactaggccaaccccaaat 28193477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 20305945 - 20305909
Alignment:
Q  4 aagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||||| |||||||||||||||||||||||||    
T  20305945 aagatcccaagccaaccactaggccaaccccaaatgg 20305909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 21092578 - 21092542
Alignment:
Q  4 aagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||||| |||||||||||||||||||||||||    
T  21092578 aagatcccaagccaaccactaggccaaccccaaatgg 21092542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 32879316 - 32879280
Alignment:
Q  4 aagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||||||||||| ||||||||||||||    
T  32879316 aagatcccaagtcaaccactagaccaaccccaaatgg 32879280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28088326 - 28088287
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  28088326 tccaagatcccaagtcaaccactaagccaaccccagatgg 28088287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 34639367 - 34639410
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatggattc 44  Q
    |||||||||||||| |||||||||| | ||||||||||||||||    
T  34639367 tccaagatcccaagccaaccactagactaaccccaaatggattc 34639410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 39349296 - 39349257
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  39349296 tccaagatcccaagccaaccactgggccaaccccaaatgg 39349257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8042694 - 8042652
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatggatt 43  Q
    |||||||||||||| ||| ||||||| ||||||||||||||||    
T  8042694 tccaagatcccaagccaagcactaggtcaaccccaaatggatt 8042652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 15259567 - 15259609
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatggatt 43  Q
    |||||||||||||  |||||||||| |||||||||||||||||    
T  15259567 tccaagatcccaaaccaaccactagaccaaccccaaatggatt 15259609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 36848918 - 36848952
Alignment:
Q  9 cccaagtcaaccactaggccaaccccaaatggatt 43  Q
    |||||||||||||||| ||||||||||||||||||    
T  36848918 cccaagtcaaccactatgccaaccccaaatggatt 36848952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 8387608 - 8387645
Alignment:
Q  4 aagatcccaagtcaaccactaggccaaccccaaatgga 41  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  8387608 aagatctcaagacaaccactaggccaaccccaaatgga 8387645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24018422 - 24018385
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaat 38  Q
    |||||||||||||||||||||||||  |||||||||||    
T  24018422 tccaagatcccaagtcaaccactagatcaaccccaaat 24018385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 21362979 - 21362940
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21362979 tccaagatcccaagtcaaccactaggccaaccccaaatgg 21362940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 25344221 - 25344260
Alignment:
Q  4 aagatcccaagtcaaccactaggccaaccccaaatggatt 43  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25344221 aagatcccaagtcaaccactaggccaaccccaaatggatt 25344260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 48977424 - 48977385
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48977424 tccaagatcccaagtcaaccactaggccaaccccaaatgg 48977385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 7485686 - 7485725
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  7485686 tccaagatcccaagtcaaccactatgccaaccccaaatgg 7485725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 18177048 - 18177087
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  18177048 tccaagatctcaagtcaaccactaggccaaccccaaatgg 18177087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 30257660 - 30257621
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  30257660 tccaagatcccaagccaaccactaggccaaccccaaatgg 30257621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 30807314 - 30807353
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  30807314 tccaagatcccaagccaaccactaggccaaccccaaatgg 30807353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 34492736 - 34492775
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  34492736 tccaagatcccaagccaaccactaggccaaccccaaatgg 34492775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 35492947 - 35492908
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  35492947 tccaagatcccaagccaaccactaggccaaccccaaatgg 35492908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 45529915 - 45529954
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  45529915 tccaagatcccaagccaaccactaggccaaccccaaatgg 45529954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 46576384 - 46576345
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  46576384 tccaagatcccaagccaaccactaggccaaccccaaatgg 46576345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 53424337 - 53424376
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  53424337 tccaagatcccaagccaaccactaggccaaccccaaatgg 53424376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 25379797 - 25379760
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaat 38  Q
    |||||||||||||| |||||||||||||||||||||||    
T  25379797 tccaagatcccaagccaaccactaggccaaccccaaat 25379760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 52821796 - 52821833
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaat 38  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  52821796 tccaagatcccaagtcaaccactaggccaacaccaaat 52821833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 8456314 - 8456350
Alignment:
Q  4 aagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||||| |||||||||||||||||||||||||    
T  8456314 aagatcccaagccaaccactaggccaaccccaaatgg 8456350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 32151460 - 32151428
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccc 33  Q
    |||||||||||||||||||||||||||||||||    
T  32151460 tccaagatcccaagtcaaccactaggccaaccc 32151428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 4252557 - 4252596
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  4252557 tccaagatctcaagccaaccactaggccaaccccaaatgg 4252596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 7470376 - 7470415
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  7470376 tccaagatctcaagtcaaccactaggcaaaccccaaatgg 7470415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 25289875 - 25289914
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  25289875 tccaagatcccaagccaaccactagaccaaccccaaatgg 25289914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 31537999 - 31538038
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  31537999 tccaagatcctaagccaaccactaggccaaccccaaatgg 31538038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 40133610 - 40133649
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||| |||||||| |||||||||||||||||||||||||    
T  40133610 tccaaaatcccaagccaaccactaggccaaccccaaatgg 40133649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 40940861 - 40940822
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  40940861 tccaagatcccaagccaaccactagaccaaccccaaatgg 40940822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 45272577 - 45272616
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  45272577 tccaagatcccaagccaacgactaggccaaccccaaatgg 45272616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 50583028 - 50582989
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  50583028 tccaagatcccaaaccaaccactaggccaaccccaaatgg 50582989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 52455810 - 52455849
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  52455810 tccaagatccctagccaaccactaggccaaccccaaatgg 52455849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 4462669 - 4462631
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatg 39  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  4462669 tccaagatctcaagccaaccactaggccaaccccaaatg 4462631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 49258425 - 49258462
Alignment:
Q  3 caagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  49258425 caagatcccaagccaaccactaggcaaaccccaaatgg 49258462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 46607846 - 46607807
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46607846 tccaagatcccaagtcaaccactaggccaaccccaaatgg 46607807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 52135166 - 52135125
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatggat 42  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  52135166 tccaagatcccaagtcaaccactagaccaaccccaaatggat 52135125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 2272377 - 2272342
Alignment:
Q  4 aagatcccaagtcaaccactaggccaaccccaaatg 39  Q
    ||||||||||||||||||||||||||||||||||||    
T  2272377 aagatcccaagtcaaccactaggccaaccccaaatg 2272342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 4621398 - 4621437
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  4621398 tccaagatcccaagccaaccactaggccaaccccaaatgg 4621437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 7197407 - 7197446
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  7197407 tccaagatcccaagccaaccactaggccaaccccaaatgg 7197446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 8077683 - 8077644
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  8077683 tccaagatcccaagccaaccactaggccaaccccaaatgg 8077644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 24217014 - 24216975
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  24217014 tccaagatcccaagtcaaccactaggtcaaccccaaatgg 24216975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 24674429 - 24674390
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  24674429 tccaagatcccaagccaaccactaggccaaccccaaatgg 24674390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 34778378 - 34778339
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  34778378 tccaagatcccaagccaaccactaggccaaccccaaatgg 34778339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 23232428 - 23232465
Alignment:
Q  3 caagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||||||||||||||||| |||||||||    
T  23232428 caagatcccaagtcaaccactaggccaatcccaaatgg 23232465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 32729578 - 32729542
Alignment:
Q  4 aagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||||| |||||||||||||||||||||||||    
T  32729578 aagatcccaagccaaccactaggccaaccccaaatgg 32729542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1486456 - 1486417
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  1486456 tccaagatcccaagccaaccactaggtcaaccccaaatgg 1486417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 14258588 - 14258627
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| ||||||||||||||| |||||||||    
T  14258588 tccaagatcccaagccaaccactaggccaagcccaaatgg 14258627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 15059563 - 15059602
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||| ||||| |||||||||||||||||||||||||    
T  15059563 tccaagattccaagccaaccactaggccaaccccaaatgg 15059602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 16899547 - 16899508
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  16899547 tccaagattacaagtcaaccactaggccaaccccaaatgg 16899508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 27455027 - 27455066
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  27455027 tccaagatcccaagccaaccactagaccaaccccaaatgg 27455066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 29057498 - 29057537
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  29057498 tccaagatcccaaaccaaccactaggccaaccccaaatgg 29057537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 47091726 - 47091687
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  47091726 tccaagatctcaagccaaccactaggccaaccccaaatgg 47091687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 1378781 - 1378743
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatg 39  Q
    |||||||| |||||||||||||||| |||||||||||||    
T  1378781 tccaagattccaagtcaaccactagaccaaccccaaatg 1378743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 46113563 - 46113605
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatggatt 43  Q
    |||||||||||||  ||||||||||||||||||||||| ||||    
T  46113563 tccaagatcccaaaccaaccactaggccaaccccaaattgatt 46113605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1095156 - 1095193
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaat 38  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  1095156 tccaagatcccaagccaaccactagaccaaccccaaat 1095193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 24122058 - 24122021
Alignment:
Q  2 ccaagatcccaagtcaaccactaggccaaccccaaatg 39  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  24122058 ccaagatcccaagccaaccactaagccaaccccaaatg 24122021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 168234 - 168198
Alignment:
Q  4 aagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  168234 aagatcccaagccaaccactaggccaactccaaatgg 168198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 2537737 - 2537701
Alignment:
Q  4 aagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||||  |||||||||||||||||||||||||    
T  2537737 aagatcccaatccaaccactaggccaaccccaaatgg 2537701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 20566385 - 20566343
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatggatt 43  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  20566385 tccaagatcccaagccaaccactaggccaaccccaaatggatt 20566343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 5609363 - 5609402
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  5609363 tccaagatcccaagccaaccactaggccaaccccaaatgg 5609402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25852250 - 25852211
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  25852250 tccaagatcccaagccaaccactaggccaaccccaaatgg 25852211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 32986233 - 32986194
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  32986233 tccaagatcccaagccaaccactaggccaaccccaaatgg 32986194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 40059013 - 40059052
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  40059013 tccaagatcccaagccaaccactaggccaaccccaaatgg 40059052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 42245779 - 42245744
Alignment:
Q  4 aagatcccaagtcaaccactaggccaaccccaaatg 39  Q
    ||||||||||||||||||||||||||||||||||||    
T  42245779 aagatcccaagtcaaccactaggccaaccccaaatg 42245744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 46714428 - 46714389
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  46714428 tccaagatcccaagccaaccactaggccaaccccaaatgg 46714389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 54127503 - 54127542
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  54127503 tccaagatcccaagccaaccactaggccaaccccaaatgg 54127542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 51535649 - 51535611
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatg 39  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  51535649 tccaagatcccaagtcaaccactaggccaaccctaaatg 51535611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1985872 - 1985833
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| ||||||||||||||| |||||||||    
T  1985872 tccaagatcccaagccaaccactaggccaatcccaaatgg 1985833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 10125818 - 10125783
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaa 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  10125818 tccaagatcccaagtcaaccactaggccaactccaa 10125783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 13873456 - 13873495
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  13873456 tccaagatcccaagcaaaccactaggccaaccccaaatgg 13873495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 19660693 - 19660732
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||| ||||||||    
T  19660693 tccaagatcccaagccaaccactaggccaactccaaatgg 19660732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 22625231 - 22625270
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| ||||||||||||||||| |||||||    
T  22625231 tccaagatcccaagccaaccactaggccaacctcaaatgg 22625270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 33696440 - 33696479
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  33696440 tccaagatcccaagccaaccactaggccaaccctaaatgg 33696479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 35674902 - 35674941
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  35674902 tccaagatcccaagccaaccacttggccaaccccaaatgg 35674941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 52983655 - 52983616
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  52983655 tccaagatctcaagccaaccactaggccaaccccaaatgg 52983616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 13550240 - 13550202
Alignment:
Q  5 agatcccaagtcaaccactaggccaaccccaaatggatt 43  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  13550240 agatctcaagtcaaccactaggccaaccgcaaatggatt 13550202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 45787864 - 45787902
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatg 39  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  45787864 tccaagattccaagccaaccactaggccaaccccaaatg 45787902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 17415717 - 17415676
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatggat 42  Q
    ||||||||||||||||||||||||| |||| || ||||||||    
T  17415717 tccaagatcccaagtcaaccactagaccaagcctaaatggat 17415676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34722206 - 34722169
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaat 38  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  34722206 tccaagatcccaagccaaccactaagccaaccccaaat 34722169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40252334 - 40252293
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatggat 42  Q
    |||||||| |||||||||| ||||| ||||||||||||||||    
T  40252334 tccaagattccaagtcaactactagaccaaccccaaatggat 40252293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 35229204 - 35229172
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccc 33  Q
    |||||||||||||| ||||||||||||||||||    
T  35229204 tccaagatcccaagccaaccactaggccaaccc 35229172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 55961903 - 55961939
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaa 37  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  55961903 tccaagatcccaagccaaccactaggccaatcccaaa 55961939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5243 - 5287
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatggattcg 45  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||    
T  5243 tccaagatcccaagccaaccactaggccaaccccaaatgggttcg 5287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2751311 - 2751267
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatggattcg 45  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||    
T  2751311 tccaagatcccaagccaaccactaggccaaccccaaatgggttcg 2751267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 2103095 - 2103056
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  2103095 tccaagatcccaagccaaccactaggccaaccccaaatgg 2103056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 2344339 - 2344300
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  2344339 tccaagatcccaagccaaccactaggccaaccccaaatgg 2344300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 7176023 - 7176062
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  7176023 tccaagatcccaagccaaccactaggccaaccccaaatgg 7176062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 7275317 - 7275278
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  7275317 tccaagatcccaagccaaccactaggccaaccccaaatgg 7275278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 8435856 - 8435895
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  8435856 tccaagatcccaagtcaaccactagaccaaccccaaatgg 8435895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 18044147 - 18044108
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  18044147 tccaagatcccaagccaaccactaggccaaccccaaatgg 18044108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 21217994 - 21218033
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  21217994 tccaagatcccaagccaaccactaggccaaccccaaatgg 21218033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 23854436 - 23854397
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  23854436 tccaagatcccaagccaaccactaggccaaccccaaatgg 23854397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 32849631 - 32849592
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  32849631 tccaagatcccaagtcaaccactaggctaaccccaaatgg 32849592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 40543071 - 40543110
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  40543071 tccaagatcccaagccaaccactaggccaaccccaaatgg 40543110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 13332584 - 13332622
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatg 39  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  13332584 tccaagatcccaagccaaccactaggccaaccccaaatg 13332622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 22119928 - 22119890
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatg 39  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  22119928 tccaagatcccaagccaaccactaggccaaccccaaatg 22119890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 28089856 - 28089814
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatggatt 43  Q
    ||||||||| |||| ||||||||||||||||||||||||||||    
T  28089856 tccaagatctcaagccaaccactaggccaaccccaaatggatt 28089814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27312192 - 27312155
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaat 38  Q
    |||||||||||||| |||||||||||||||||||||||    
T  27312192 tccaagatcccaagccaaccactaggccaaccccaaat 27312155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28647009 - 28646972
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaat 38  Q
    |||||||||||||||||| |||||||||||||||||||    
T  28647009 tccaagatcccaagtcaatcactaggccaaccccaaat 28646972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 7799993 - 7800032
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  7799993 tccaagatcccaagccaaccactaggtcaaccccaaatgg 7800032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 10091228 - 10091189
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  10091228 tccaagatcccaagccaaccactagaccaaccccaaatgg 10091189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 12211696 - 12211735
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  12211696 tccaagatcctaagccaaccactaggccaaccccaaatgg 12211735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 17212093 - 17212054
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  17212093 tccaagatcccaagccaaccactaagccaaccccaaatgg 17212054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 21370637 - 21370598
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  21370637 tccaagatcccaaaccaaccactaggccaaccccaaatgg 21370598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25333459 - 25333420
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  25333459 tccaagatcccaagccaaccactaagccaaccccaaatgg 25333420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 27009399 - 27009360
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  27009399 tccaagatccgaagccaaccactaggccaaccccaaatgg 27009360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 31197631 - 31197592
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  31197631 tccaagatcccaagccaaccactagaccaaccccaaatgg 31197592  T

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Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 31713056 - 31713095
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  31713056 tccaagatcccaaaccaaccactaggccaaccccaaatgg 31713095  T

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Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 39145813 - 39145852
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  39145813 tccaagatcccaagtcaaccactaggtcaacctcaaatgg 39145852  T

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Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 1469152 - 1469114
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatg 39  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  1469152 tccaagatttcaagtcaaccactaggccaaccccaaatg 1469114  T

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Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 9683862 - 9683824
Alignment:
Q  5 agatcccaagtcaaccactaggccaaccccaaatggatt 43  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  9683862 agatctcaagtcaaccactaggccaaccgcaaatggatt 9683824  T

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Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 21835191 - 21835149
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatggatt 43  Q
    |||||||||||||| ||||||||||| |||||| |||||||||    
T  21835191 tccaagatcccaagccaaccactaggtcaaccctaaatggatt 21835149  T

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Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 22696360 - 22696322
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatg 39  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  22696360 tccaagatcccaaatcaaccactaggccaacccctaatg 22696322  T

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Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 42814904 - 42814867
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaat 38  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  42814904 tccaagatcccaagtcaaccactaagccaactccaaat 42814867  T

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Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 22638329 - 22638293
Alignment:
Q  4 aagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  22638329 aagatctcaagtcaaccactagaccaaccccaaatgg 22638293  T

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Target: scaffold0199 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 8568 - 8607
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  8568 tccaagatcccaagccaaccactaggccaaccccaaatgg 8607  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 8192512 - 8192551
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  8192512 tccaagatcccaagccaaccactaggccaaccccaaatgg 8192551  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 15037995 - 15037956
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  15037995 tccaagatcccgagtcaaccactaggccaaccccaaatgg 15037956  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 18976586 - 18976625
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  18976586 tccaagatcccaagccaaccactaggccaaccccaaatgg 18976625  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 33827734 - 33827773
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  33827734 tccaagatcccaagccaaccactaggccaaccccaaatgg 33827773  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 44976316 - 44976353
Alignment:
Q  2 ccaagatcccaagtcaaccactaggccaaccccaaatg 39  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  44976316 ccaagatcccaagccaaccactaggccaaccccaaatg 44976353  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 4567600 - 4567640
Alignment:
Q  3 caagatcccaagtcaaccactaggccaaccccaaatggatt 43  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  4567600 caagatcccaagccaactactaggccaaccccaaatggatt 4567640  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 11941371 - 11941410
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  11941371 tccaagatcccaagccaaccactagaccaaccccaaatgg 11941410  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25293202 - 25293163
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  25293202 tccaagatcccaagtcaaccactagaccaacctcaaatgg 25293163  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 44946214 - 44946253
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  44946214 tccaagatcccaagccaaccactagaccaaccccaaatgg 44946253  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 4852594 - 4852556
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatg 39  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  4852594 tccaagattccaagtcaaccactaggtcaaccccaaatg 4852556  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 24196039 - 24196001
Alignment:
Q  2 ccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  24196039 ccaaaatcccaagccaaccactaggccaaccccaaatgg 24196001  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 14946813 - 14946776
Alignment:
Q  3 caagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  14946813 caagatctcaagtcaaccactaggccaactccaaatgg 14946776  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 12983963 - 12984003
Alignment:
Q  3 caagatcccaagtcaaccactaggccaaccccaaatggatt 43  Q
    ||||||| ||||||||||||||| |||||| ||||||||||    
T  12983963 caagatctcaagtcaaccactagaccaacctcaaatggatt 12984003  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 20297596 - 20297560
Alignment:
Q  4 aagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  20297596 aagatcccaagccaaccactgggccaaccccaaatgg 20297560  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 27269514 - 27269550
Alignment:
Q  4 aagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  27269514 aagatcccaagccaaccactatgccaaccccaaatgg 27269550  T

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Target: scaffold0623 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 1217 - 1255
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatg 39  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  1217 tccaagatcccaagccaaccactaggccaaccccaaatg 1255  T

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Target: scaffold0459 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 10854 - 10892
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatg 39  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  10854 tccaagatcccaagccaaccactaggccaaccccaaatg 10892  T

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Target: scaffold0366 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 9460 - 9498
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatg 39  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  9460 tccaagatcccaagccaaccactaggccaaccccaaatg 9498  T

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Target: scaffold0366; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 12161 - 12199
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatg 39  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  12161 tccaagatcccaagccaaccactaggccaaccccaaatg 12199  T

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Target: scaffold0240 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12915 - 12952
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaat 38  Q
    |||||||||||||||||||||||||||||| |||||||    
T  12915 tccaagatcccaagtcaaccactaggccaatcccaaat 12952  T

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Target: scaffold0026 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 97529 - 97566
Alignment:
Q  3 caagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||| |||||||||||||||||||||||||    
T  97529 caagatcccaagccaaccactaggccaaccccaaatgg 97566  T

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Target: scaffold0328 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 15027 - 14988
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||| | |||||||||||||||||||||||||    
T  15027 tccaagatcccaggccaaccactaggccaaccccaaatgg 14988  T

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Target: scaffold0070 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 40361 - 40322
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  40361 tccaagatcctaagccaaccactaggccaaccccaaatgg 40322  T

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Target: scaffold0051 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 53032 - 53071
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaatgg 40  Q
    |||||||||||||| ||||||||||||||| |||||||||    
T  53032 tccaagatcccaagccaaccactaggccaatcccaaatgg 53071  T

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Target: scaffold0217 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7470 - 7507
Alignment:
Q  1 tccaagatcccaagtcaaccactaggccaaccccaaat 38  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  7470 tccaagatcccaagccaactactaggccaaccccaaat 7507  T

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