View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8771_high_6 (Length: 344)

Name: NF8771_high_6
Description: NF8771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8771_high_6
NF8771_high_6
[»] chr3 (4 HSPs)
chr3 (23-163)||(7051054-7051194)
chr3 (233-334)||(7051264-7051365)
chr3 (87-150)||(30174410-30174474)
chr3 (236-327)||(52099114-52099203)
[»] chr4 (4 HSPs)
chr4 (233-332)||(17225081-17225180)
chr4 (81-163)||(17225242-17225324)
chr4 (81-163)||(5373884-5373966)
chr4 (57-142)||(40225492-40225578)
[»] chr1 (8 HSPs)
chr1 (233-331)||(11398103-11398200)
chr1 (89-163)||(11398268-11398344)
chr1 (237-327)||(18136560-18136649)
chr1 (59-160)||(18136414-18136515)
chr1 (79-142)||(52935170-52935234)
chr1 (79-142)||(52942805-52942869)
chr1 (59-142)||(52946193-52946277)
chr1 (89-128)||(31230366-31230405)
[»] chr2 (2 HSPs)
chr2 (233-334)||(42735437-42735538)
chr2 (79-163)||(42735280-42735367)
[»] chr7 (4 HSPs)
chr7 (233-333)||(47762228-47762327)
chr7 (59-163)||(47762053-47762158)
chr7 (86-163)||(20290674-20290752)
chr7 (241-301)||(20290530-20290590)
[»] chr8 (1 HSPs)
chr8 (240-327)||(6142032-6142119)
[»] chr5 (2 HSPs)
chr5 (59-160)||(10548172-10548274)
chr5 (81-163)||(20319530-20319612)
[»] scaffold0590 (1 HSPs)
scaffold0590 (59-160)||(5017-5121)


Alignment Details
Target: chr3 (Bit Score: 141; Significance: 7e-74; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 23 - 163
Target Start/End: Original strand, 7051054 - 7051194
Alignment:
Q  23 aacaattacaaatttgatgtgacatgtgaggaaggttgtaatgagtcatggaactggaaggggtaatatgggaaaaaggaatatggacccttataaataa 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7051054 aacaattacaaatttgatgtgacatgtgaggaaggttgtaatgagtcatggaactggaaggggtaatatgggaaaaaggaatatggacccttataaataa 7051153  T
Q  123 gagaaatccaaggaaataaggatggaaaatatgtgatgaaa 163  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7051154 gagaaatccaaggaaataaggatggaaaatatgtgatgaaa 7051194  T

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Target: chr3; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 233 - 334
Target Start/End: Original strand, 7051264 - 7051365
Alignment:
Q  233 attgttattttacttgtaaattggttgttattcgtcctttgtttatactctgggagttgaattgattgttcatattcaatgcaatagcaacaattatctc 332  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7051264 attgttattttacttgcaaattggttgttattcgtcctttgtttatactgtgggagttgaattgattgttcatattcaatgcaatagcaacaattatctc 7051363  T
Q  333 tg 334  Q
    ||    
T  7051364 tg 7051365  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 30174474 - 30174410
Alignment:
Q  87 aatatgggaaaaaggaatatggacccttataaataagag-aaatccaaggaaataaggatggaaa 150  Q
    |||||||||| |||||||||||| ||||||||||||||| ||| ||||||||||||| |||||||    
T  30174474 aatatgggaataaggaatatggatccttataaataagagaaaagccaaggaaataagcatggaaa 30174410  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 327
Target Start/End: Original strand, 52099114 - 52099203
Alignment:
Q  236 gttattttacttgtaaattggttgttattcgtcctttgtttatactctgggagttgaattgattgttcatattcaatgcaatagcaacaatt 327  Q
    |||||||||||||  ||||||||| ||||| ||||| |||||||| || ||||||| ||| |||||||| | ||||| ||||||||||||||    
T  52099114 gttattttacttgctaattggttg-tattcctccttagtttatacactaggagttggattcattgttca-aatcaatacaatagcaacaatt 52099203  T

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Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 233 - 332
Target Start/End: Complemental strand, 17225180 - 17225081
Alignment:
Q  233 attgttattttacttgtaaattggttgttattcgtcctttgtttatactctgggagttgaattgattgttcatattcaatgcaatagcaacaattatctc 332  Q
    |||||||||||||||| |||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17225180 attgttattttacttgcaaattggttgttattcctccttagtttatacactgggagttgaattgattgttcatattcaatacaatagcaacaattatctc 17225081  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 17225324 - 17225242
Alignment:
Q  81 aggggtaatatgggaaaaaggaatatggacccttataaataagagaaat-ccaaggaaataaggatggaaaatatgtgatgaaa 163  Q
    ||||| ||||||||||| || |||| ||||||||||||||||||||||  |||||||| |||| |||||| |||||||||||||    
T  17225324 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagccaaggaagtaagcatggaagatatgtgatgaaa 17225242  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 5373966 - 5373884
Alignment:
Q  81 aggggtaatatgggaaaaaggaatatggacccttataaataagag-aaatccaaggaaataaggatggaaaatatgtgatgaaa 163  Q
    ||||| ||||||||||| || |||| ||||||||||||||||||| |||  |||||||||||| ||| ||||| ||||||||||    
T  5373966 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagtcaaggaaataagcatgaaaaatgtgtgatgaaa 5373884  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 40225578 - 40225492
Alignment:
Q  57 gttgtaatgagtcatggaactggaaggggtaatatgggaaaaaggaatatggacccttataaataagag-aaatccaaggaaataag 142  Q
    ||||||||||||| | ||  | ||||||| | ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||||    
T  40225578 gttgtaatgagtcttagagttagaaggggcattatgggaaataggaatatggaccctaataaatatgagaaaagccaaggaaataag 40225492  T

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Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 233 - 331
Target Start/End: Complemental strand, 11398200 - 11398103
Alignment:
Q  233 attgttattttacttgtaaattggttgttattcgtcctttgtttatactctgggagttgaattgattgttcatattcaatgcaatagcaacaattatct 331  Q
    |||||||||||||||| |||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||| ||| ||||||||||||||||||    
T  11398200 attgttattttacttgcaaattggttgttattcctccttagtttatacactgggagttgaattgattgttcaaatt-aatacaatagcaacaattatct 11398103  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 163
Target Start/End: Complemental strand, 11398344 - 11398268
Alignment:
Q  89 tatgggaaaaaggaatatggacccttataaataagag-aaatccaaggaaataaggatgg-aaaatatgtgatgaaa 163  Q
    ||||| ||| ||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||||||||||||    
T  11398344 tatggaaaataggaatatggacccttataaatatgagaaaagccaaggaaataaggatggaaaaatatgtgatgaaa 11398268  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 327
Target Start/End: Original strand, 18136560 - 18136649
Alignment:
Q  237 ttattttacttgtaaattggttgttattcgtcctttgtttatactctgggagttgaattgattgttcatattcaatgcaatagcaacaatt 327  Q
    ||||||||||||  |||||||||| |||| ||||| ||||| || |||||||||  ||| |||||||| ||| ||||||||||||||||||    
T  18136560 ttattttacttgctaattggttgt-attcctccttagtttacacactgggagtttgattcattgttcacattaaatgcaatagcaacaatt 18136649  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 160
Target Start/End: Original strand, 18136414 - 18136515
Alignment:
Q  59 tgtaatgagtcatggaactggaaggggtaatatgggaaaaaggaatatggacccttataaata--agagaaatccaaggaaataaggatggaaaatatgt 156  Q
    ||||||||||| | ||  | ||||||| | ||||||||| |||||||||||||||||||||||  ||| ||| ||||||||||||| |||  ||||||||    
T  18136414 tgtaatgagtcttagagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaaagccaaggaaataagcatg--aaatatgt 18136511  T
Q  157 gatg 160  Q
    ||||    
T  18136512 gatg 18136515  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 79 - 142
Target Start/End: Original strand, 52935170 - 52935234
Alignment:
Q  79 gaaggggtaatatgggaaaaaggaatatggacccttataaataagag-aaatccaaggaaataag 142  Q
    ||||||| | ||||||||| ||||||||||||||||||||||| ||| ||| |||||||||||||    
T  52935170 gaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 52935234  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 79 - 142
Target Start/End: Original strand, 52942805 - 52942869
Alignment:
Q  79 gaaggggtaatatgggaaaaaggaatatggacccttataaataagag-aaatccaaggaaataag 142  Q
    ||||||| | ||||||||| ||||||||||||||||||||||| ||| ||| |||||||||||||    
T  52942805 gaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 52942869  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 52946193 - 52946277
Alignment:
Q  59 tgtaatgagtcatggaactggaaggggtaatatgggaaaaaggaatatggacccttataaataagag-aaatccaaggaaataag 142  Q
    ||||||||||| | ||  | ||||||| | ||||||||| ||||||||||||||||||||||| ||| ||| |||||||||||||    
T  52946193 tgtaatgagtcttagagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 52946277  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 31230405 - 31230366
Alignment:
Q  89 tatgggaaaaaggaatatggacccttataaataagagaaa 128  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  31230405 tatgggaaataggaatatggacccttataaatatgagaaa 31230366  T

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Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 233 - 334
Target Start/End: Original strand, 42735437 - 42735538
Alignment:
Q  233 attgttattttacttgtaaattggttgttattcgtcctttgtttatactctgggagttgaattgattgttcatattcaatgcaatagcaacaattatctc 332  Q
    ||||||| |||||||| ||||||| |||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||| |||||| ||||||||||||    
T  42735437 attgttagtttacttgcaaattggctgttattcctccttagtttatacactgggagttgaattgatagttcatattcaatacaatagaaacaattatctc 42735536  T
Q  333 tg 334  Q
    ||    
T  42735537 tg 42735538  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 42735280 - 42735367
Alignment:
Q  79 gaaggggtaatatgggaaaaaggaatatggaccct--tataaataagagaaatc-caaggaaataaggatggaaaatatgtgatgaaa 163  Q
    ||||||| | ||||||||| |||||||||||||||  |||||||| ||||||   |||||||||||| ||| ||||||||||||||||    
T  42735280 gaaggggcattatgggaaataggaatatggaccctcttataaatatgagaaaaggcaaggaaataagcatgaaaaatatgtgatgaaa 42735367  T

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Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 233 - 333
Target Start/End: Original strand, 47762228 - 47762327
Alignment:
Q  233 attgttattttacttgtaaattggttgttattcgtcctttgtttatactctgggagttgaattgattgttcatattcaatgcaatagcaacaattatctc 332  Q
    |||||||||||||||| ||| |||||||||||  ||||| ||||||||  |||||||||||||||||||||| ||| ||| |||||||||||||||||||    
T  47762228 attgttattttacttgcaaaatggttgttatttctccttagtttatacattgggagttgaattgattgttcaaatt-aatacaatagcaacaattatctc 47762326  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 163
Target Start/End: Original strand, 47762053 - 47762158
Alignment:
Q  59 tgtaatgagtcatggaactggaaggggtaatatgggaaaaaggaatatggacccttataaataagag-aaatccaaggaaataaggatggaaaatatgtg 157  Q
    ||||||||||| | ||  | ||||||| | ||||| ||| ||||||||||||||||||||||| ||| ||| |||||||||||||||| |||||||||||    
T  47762053 tgtaatgagtcttagagttagaaggggcattatggaaaataggaatatggacccttataaatatgagaaaagccaaggaaataaggattgaaaatatgtg 47762152  T
Q  158 atgaaa 163  Q
    ||||||    
T  47762153 atgaaa 47762158  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 20290752 - 20290674
Alignment:
Q  86 taatatgggaaaaaggaatatggacccttataaataagagaaatccaaggaaataag-gatggaaaatatgtgatgaaa 163  Q
    |||||||| ||| | |||||||||||||||||||||||||||| ||||| |||||||  ||||||||||||||||||||    
T  20290752 taatatggtaaatatgaatatggacccttataaataagagaaagccaagcaaataagacatggaaaatatgtgatgaaa 20290674  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 20290590 - 20290530
Alignment:
Q  241 tttacttgtaaattggttgttattcgtcctttgtttatactctgggagttgaattgattgt 301  Q
    |||||||| |||||||||||||||| ||||| |||||||| |||||||||| |||||||||    
T  20290590 tttacttgcaaattggttgttattcctccttagtttatacactgggagttggattgattgt 20290530  T

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Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 240 - 327
Target Start/End: Original strand, 6142032 - 6142119
Alignment:
Q  240 ttttacttgtaaattggttgttattcgtcctttgtttatactctgggagttgaattgattgttcatattcaatgcaatagcaacaatt 327  Q
    ||||||| |||||||||| | ||||| |||||||||||||| |||||||||| ||| || ||||||||||| ||||||||||||||||    
T  6142032 ttttactagtaaattggtagatattcctcctttgtttatacactgggagttggattcatcgttcatattcagtgcaatagcaacaatt 6142119  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 160
Target Start/End: Original strand, 10548172 - 10548274
Alignment:
Q  59 tgtaatgagtcatggaactggaaggggtaatatgggaaaaaggaatatggacccttataaataagag-aaatccaaggaaataaggatggaaaatatgtg 157  Q
    ||||||||||| | ||  | ||||||| | ||||| ||| ||||||||||||| ||||||||| ||| ||| ||||||||||||| |||||| || ||||    
T  10548172 tgtaatgagtcttagagttagaaggggcattatggaaaataggaatatggacctttataaatatgagaaaagccaaggaaataagtatggaatatgtgtg 10548271  T
Q  158 atg 160  Q
    |||    
T  10548272 atg 10548274  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 20319612 - 20319530
Alignment:
Q  81 aggggtaatatgggaaaaaggaatatggacccttataaataagagaaa--tccaaggaaataaggatggaaaatatgtgatgaaa 163  Q
    ||||| ||||||||||| || |||| ||||||||||||||||||||||  ||| |||||||||| ||| || || ||||||||||    
T  20319612 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagtcc-aggaaataagcatgaaatatgtgtgatgaaa 20319530  T

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Target: scaffold0590 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 160
Target Start/End: Complemental strand, 5121 - 5017
Alignment:
Q  59 tgtaatgagtcatggaactggaaggggtaatatgggaaaaaggaatatggaccct--tataaataagag-aaatccaaggaaataaggatggaaaatatg 155  Q
    ||||||||||| | ||  | ||||||| | ||||||||| |||||||||||||||  |||||||| ||| ||| ||||||||||||| ||| || || ||    
T  5121 tgtaatgagtcttagagttagaaggggcattatgggaaataggaatatggacccttatataaatatgagaaaagccaaggaaataagcatgaaatatgtg 5022  T
Q  156 tgatg 160  Q
    |||||    
T  5021 tgatg 5017  T

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