View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8771_low_1 (Length: 532)
Name: NF8771_low_1
Description: NF8771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8771_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 202 - 496
Target Start/End: Original strand, 35912954 - 35913249
Alignment:
| Q |
202 |
aaggaattaatgttagagtcttatgttgtacaaaagctacttgttagtttgttaacaattgggaggtacaaggagtaa-tggtatgatgaaaggtggaag |
300 |
Q |
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| T |
35912954 |
aaggaattaatgttagagtcttatgttgtacaaaagctacttgttagtttgttaacaattgggaggtgcaaggagtaaatggtatgatgaaaggtggaag |
35913053 |
T |
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| Q |
301 |
aaaaagttttgttctgttgatatgtataaatatatctcttgtttagtttggaatgactaatgaatttgtttggttcttatttacaaatctctcttattct |
400 |
Q |
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| T |
35913054 |
aaaaagttttgttctgttgatatgtataaatatatctcttgtttagtttggaatgactaatgaatttgtttggttcttatttacaaatctctcttattct |
35913153 |
T |
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| Q |
401 |
gttgtttatgcttgcacaattcaagctagtatattttgtgtttagaaccacttgcaatgcattgtccagaagtgaaaatgtactacataatctgaa |
496 |
Q |
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| T |
35913154 |
gttgtttatgcttgcacaattcaagctagtatattttgtgtttagaaccacttgcaatgcattgtccagaagtgaaaatgtactacataatctgaa |
35913249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 35912806 - 35912952
Alignment:
| Q |
19 |
atttgatctaccaaagtaagttatccaacaagagtaatatttctaagagccgtatgatccccaagagaggccaagtgaaagtggggattgtgttgggatt |
118 |
Q |
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| T |
35912806 |
atttgatctaccaaagtaagttatccaacaagagtaatatttctaagagccgtatgatccccaagagaggccaagtgaaagtggggattgtgttgggatt |
35912905 |
T |
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| Q |
119 |
gtttcataatgtctcctccatcttctcatcaagatgtgttcacttat |
165 |
Q |
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| T |
35912906 |
gtttcataatgtctcctccatcttctcatcaagatgtgttcacttat |
35912952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 334 - 388
Target Start/End: Original strand, 35906808 - 35906866
Alignment:
| Q |
334 |
atctcttgtttagtttggaatgactaatgaatt----tgtttggttcttatttacaaat |
388 |
Q |
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| T |
35906808 |
atctcttgttttgtttggaatgactaatgaatgaatctgtttggttcttatttacaaat |
35906866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 492
Target Start/End: Complemental strand, 4417553 - 4417504
Alignment:
| Q |
443 |
tagaaccacttgcaatgcattgtccagaagtgaaaatgtactacataatc |
492 |
Q |
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| T |
4417553 |
tagaaccactggcagtgtattgtccagaagtaaaaatatactacataatc |
4417504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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