View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8771_low_12 (Length: 309)
Name: NF8771_low_12
Description: NF8771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8771_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 41208476 - 41208255
Alignment:
| Q |
1 |
acaagaccctctttctcagatgacccagaagcagaaccagaaccgttattattgtcatgtgtcttctctgtctttcttttcttcttggttcctctcacag |
100 |
Q |
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| T |
41208476 |
acaagaccctctttctcagatgacccagaagcagaaccagaaccgttattattgtcatgtgtcttctctgtctttcttctcttcttggttcctctcacag |
41208377 |
T |
|
| Q |
101 |
gacccatcacaacaaattaattgaatcaagaattttgaaggggcaacaaagtctacaagaaagaattcaaagggtcaaagacaaaagaaaaccaaaacac |
200 |
Q |
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| T |
41208376 |
gacccatcacaacaagttaattgaatcaagaattttgaaggggcaacaaagtctacaagaaagaattcaaagggtcaaatacaaaagaaaaccaaaacac |
41208277 |
T |
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| Q |
201 |
gattcatcactatcataaattc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
41208276 |
gattcatcactatcataaattc |
41208255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 41198493 - 41198276
Alignment:
| Q |
1 |
acaagaccctctttctcagatgacccagaagcagaaccagaaccgttattattgtcatgtgtcttctctgtctttcttttcttcttggttcctctcacag |
100 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||| |||| ||| |||||||||||| |
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| T |
41198493 |
acaacaccctctttctcagatgacccagaagcagaatca------ttattattgtcataactcttctctgtctttcttctctttttgattcctctcacag |
41198400 |
T |
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| Q |
101 |
gacccatcacaacaaattaattgaatcaagaattttgaaggggcaa--caaagtctacaagaaagaattcaaagggtcaaagacaaaagaaaaccaaaac |
198 |
Q |
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| T |
41198399 |
gacccatcacaacaagttaattgaatcagaaattttgaagggtcaaatcaaagtctgcaagaaagaattcaaagggtcaaagacaaaagaaaaccaaaac |
41198300 |
T |
|
| Q |
199 |
acgattcatcactatcataaattc |
222 |
Q |
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| |||||||||||||||||||||| |
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| T |
41198299 |
aagattcatcactatcataaattc |
41198276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 294
Target Start/End: Complemental strand, 41198249 - 41198198
Alignment:
| Q |
243 |
gagtaataagacaacacttataagtcaacaacacaaaccttagagaatgatg |
294 |
Q |
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||||||||| |||| |||||||| |||||||||||||||||||||||||||| |
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| T |
41198249 |
gagtaataacacaatacttataaatcaacaacacaaaccttagagaatgatg |
41198198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 243 - 294
Target Start/End: Complemental strand, 41208234 - 41208183
Alignment:
| Q |
243 |
gagtaataagacaacacttataagtc-aacaacacaaaccttagagaatgatg |
294 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
41208234 |
gagtaataagacaacacttataagtcaaacaacacaaacc-tagagaatgatg |
41208183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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