View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8771_low_15 (Length: 289)
Name: NF8771_low_15
Description: NF8771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8771_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 235
Target Start/End: Original strand, 35672881 - 35673104
Alignment:
| Q |
15 |
acatcacacatgtctcctgaat---cctcctaatatattccctttcaccaaaaacatccaaacacaagttacaccataaacaaaaagtgacccaaacttt |
111 |
Q |
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| T |
35672881 |
acatcacacatgtctcctgaatgctcctcctaatatattccctttcactaaaaacatccaaacacaagttacaccataaacaaaaagtgacccaaacttt |
35672980 |
T |
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| Q |
112 |
gagtcatagttttcaaccctagttcaggtttttgttcttcacgtcatcatcatattcatggcatcttcaactcacactcatcaaatactaccacaaaacc |
211 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35672981 |
gagtcattgttttcaaccctagttcaggtttttgttcttcacgtcatcatcatattcatggcatcttcaactcacactcatcaaatactaccacaaaacc |
35673080 |
T |
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| Q |
212 |
ttcatggtggaggctccacctcag |
235 |
Q |
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|||||||||||||||||||||||| |
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| T |
35673081 |
ttcatggtggaggctccacctcag |
35673104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 35669663 - 35669804
Alignment:
| Q |
18 |
tcacacatgtctcctgaatcctcctaatatattccctttcaccaaaaacatccaaacacaagttacac--cataaac-aaaaagtgacccaaac---ttt |
111 |
Q |
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||||| ||||||||||||||||||||||||||| | ||||| ||| | | ||||||||||||||||| ||||||| |||||||||||||||| ||| |
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| T |
35669663 |
tcacaaatgtctcctgaatcctcctaatatatt-cgattcactaaatagagccaaacacaagttacacaacataaacaaaaaagtgacccaaactttttt |
35669761 |
T |
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| Q |
112 |
gagtcatagttttcaaccctagttcaggtttttgttcttcacgt |
155 |
Q |
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|||| |||||||||||| | ||||| ||||||||| ||||||| |
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| T |
35669762 |
gagttctagttttcaaccgt-gttcaagtttttgtttttcacgt |
35669804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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