View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8771_low_16 (Length: 269)

Name: NF8771_low_16
Description: NF8771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8771_low_16
NF8771_low_16
[»] chr4 (3 HSPs)
chr4 (17-261)||(17225231-17225475)
chr4 (145-261)||(5373873-5373989)
chr4 (168-229)||(40225492-40225554)
[»] chr5 (2 HSPs)
chr5 (145-261)||(20319519-20319635)
chr5 (168-247)||(10548194-10548274)
[»] chr1 (7 HSPs)
chr1 (145-233)||(41956048-41956136)
chr1 (171-261)||(11398257-11398349)
chr1 (168-229)||(52935172-52935234)
chr1 (168-229)||(52942807-52942869)
chr1 (168-229)||(52946215-52946277)
chr1 (168-233)||(18136436-18136503)
chr1 (176-236)||(31230344-31230405)
[»] chr7 (2 HSPs)
chr7 (168-261)||(47762075-47762169)
chr7 (193-257)||(20290667-20290731)
[»] chr3 (2 HSPs)
chr3 (168-266)||(7051112-7051210)
chr3 (173-236)||(30174411-30174475)
[»] chr2 (1 HSPs)
chr2 (168-261)||(42735282-42735378)
[»] scaffold0590 (1 HSPs)
scaffold0590 (168-247)||(5017-5099)
[»] chr8 (1 HSPs)
chr8 (19-78)||(39948169-39948228)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 17225475 - 17225231
Alignment:
Q  17 acatcataaaagcattaaagtaaatcagaagctcacaactacatacggaagaactgagagaacnnnnnnnnnnngtattatgtcctcttcaaaacnnnnn 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||         
T  17225475 acatcataaaagcattaaagtaaatcagaagctcacaactacatacggaagaactgagagaacaaaaaaaaaaagtattatgtcctcttcaaaacaaaaa 17225376  T
Q  117 nntattattcagtcattagactactttcctgtaatgagtcaaagagcaatcaggggcaatatgggaaatagaaataggacccttataaataagagaaaag 216  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17225375 aatattattcagtcattagactactttcctgtaatgagtcaaagagcaatcaggggcaatatgggaaatagaaataggacccttataaataagagaaaag 17225276  T
Q  217 ccaaggaagtaagcatggaagatatgtgatgaaactcttcttctc 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  17225275 ccaaggaagtaagcatggaagatatgtgatgaaactcttcttctc 17225231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 145 - 261
Target Start/End: Complemental strand, 5373989 - 5373873
Alignment:
Q  145 ctgtaatgagtcaaagagcaatcaggggcaatatgggaaatagaaataggacccttataaataagagaaaagccaaggaagtaagcatggaagatatgtg 244  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || || ||||    
T  5373989 ctgtaataagtcaaagagcaatcaggggcaatatgggaaatagaaataggacccttataaataagagaaaagtcaaggaaataagcatgaaaaatgtgtg 5373890  T
Q  245 atgaaactcttcttctc 261  Q
    |||||||||||||||||    
T  5373889 atgaaactcttcttctc 5373873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 40225554 - 40225492
Alignment:
Q  168 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagccaaggaagtaag 229  Q
    ||||||| |||||||||||| |||| ||||||| ||||||| |||||||||||||||| ||||    
T  40225554 aggggcattatgggaaataggaatatggaccctaataaatatgagaaaagccaaggaaataag 40225492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 145 - 261
Target Start/End: Complemental strand, 20319635 - 20319519
Alignment:
Q  145 ctgtaatgagtcaaagagcaatcaggggcaatatgggaaatagaaataggacccttataaataagagaaaagccaaggaagtaagcatggaagatatgtg 244  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| || || ||||    
T  20319635 ctgtaataagtcaaagagcaatcaggggcaatatgggaaatagaaataggacccttataaataagagaaaagtccaggaaataagcatgaaatatgtgtg 20319536  T
Q  245 atgaaactcttcttctc 261  Q
    |||||||||||||||||    
T  20319535 atgaaactcttcttctc 20319519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 10548194 - 10548274
Alignment:
Q  168 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagccaaggaagtaagcatggaagatatgtgatg 247  Q
    ||||||| ||||| |||||| |||| ||||| ||||||||| |||||||||||||||| |||| |||||| || |||||||    
T  10548194 aggggcattatggaaaataggaatatggacctttataaatatgagaaaagccaaggaaataagtatggaatatgtgtgatg 10548274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 41956048 - 41956136
Alignment:
Q  145 ctgtaatgagtcaaagagcaatcaggggcaatatgggaaatagaaataggacccttataaataagagaaaagccaaggaagtaagcatg 233  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||    
T  41956048 ctgtaatgagtcaaagagcaatcaaggacaatatgggaaatagaaataggacccttataaataagagaaaagtcaaggaaataggcatg 41956136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 261
Target Start/End: Complemental strand, 11398349 - 11398257
Alignment:
Q  171 ggcaatatgggaaatagaaata-ggacccttataaataagagaaaagccaaggaagtaagcatgg-aagatatgtgatgaaactcttcttctc 261  Q
    |||| ||||| |||||| |||| ||||||||||||||| |||||||||||||||| |||| |||| || ||||||||||||||||||||||||    
T  11398349 ggcattatggaaaataggaatatggacccttataaatatgagaaaagccaaggaaataaggatggaaaaatatgtgatgaaactcttcttctc 11398257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 52935172 - 52935234
Alignment:
Q  168 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagccaaggaagtaag 229  Q
    ||||||| |||||||||||| |||| ||||||||||||||| |||||||||||||||| ||||    
T  52935172 aggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 52935234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 52942807 - 52942869
Alignment:
Q  168 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagccaaggaagtaag 229  Q
    ||||||| |||||||||||| |||| ||||||||||||||| |||||||||||||||| ||||    
T  52942807 aggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 52942869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 52946215 - 52946277
Alignment:
Q  168 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagccaaggaagtaag 229  Q
    ||||||| |||||||||||| |||| ||||||||||||||| |||||||||||||||| ||||    
T  52946215 aggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 52946277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 18136436 - 18136503
Alignment:
Q  168 aggggcaatatgggaaatagaaata-ggacccttataaataagag-aaaagccaaggaagtaagcatg 233  Q
    ||||||| |||||||||||| |||| ||||||||||||||| ||| ||||||||||||| ||||||||    
T  18136436 aggggcattatgggaaataggaatatggacccttataaatatgagaaaaagccaaggaaataagcatg 18136503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 31230405 - 31230344
Alignment:
Q  176 tatgggaaatagaaata-ggacccttataaataagagaaaagccaaggaagtaagcatggaa 236  Q
    |||||||||||| |||| ||||||||||||||| ||||||| |||| | | |||||||||||    
T  31230405 tatgggaaataggaatatggacccttataaatatgagaaaaaccaatggaataagcatggaa 31230344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 261
Target Start/End: Original strand, 47762075 - 47762169
Alignment:
Q  168 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagccaaggaagtaagcatggaagatatgtgatgaaactcttcttctc 261  Q
    ||||||| ||||| |||||| |||| ||||||||||||||| |||||||||||||||| |||| || ||| ||||||||||||||||||||||||    
T  47762075 aggggcattatggaaaataggaatatggacccttataaatatgagaaaagccaaggaaataaggattgaaaatatgtgatgaaactcttcttctc 47762169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 257
Target Start/End: Complemental strand, 20290731 - 20290667
Alignment:
Q  193 ggacccttataaataagagaaaagccaaggaagtaag-catggaagatatgtgatgaaactcttct 257  Q
    ||||||||||||||||||| ||||||||| || |||| ||||||| ||||||||||||| ||||||    
T  20290731 ggacccttataaataagag-aaagccaagcaaataagacatggaaaatatgtgatgaaattcttct 20290667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 168 - 266
Target Start/End: Original strand, 7051112 - 7051210
Alignment:
Q  168 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagccaaggaagtaagcatggaagatatgtgatgaaactcttcttctcactcg 266  Q
    ||||| ||||||||||| || |||| ||||||||||||||||||||||  |||||||| |||| |||||| |||||||||||||||||||||||| ||||    
T  7051112 aggggtaatatgggaaaaaggaatatggacccttataaataagagaaat-ccaaggaaataaggatggaaaatatgtgatgaaactcttcttctctctcg 7051210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 30174475 - 30174411
Alignment:
Q  173 caatatgggaaatagaaata-ggacccttataaataagagaaaagccaaggaagtaagcatggaa 236  Q
    |||||||||||  || |||| ||| |||||||||||||||||||||||||||| |||||||||||    
T  30174475 caatatgggaataaggaatatggatccttataaataagagaaaagccaaggaaataagcatggaa 30174411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 261
Target Start/End: Original strand, 42735282 - 42735378
Alignment:
Q  168 aggggcaatatgggaaatagaaata-ggaccct--tataaataagagaaaagccaaggaagtaagcatggaagatatgtgatgaaactcttcttctc 261  Q
    ||||||| |||||||||||| |||| |||||||  |||||||| |||||||| ||||||| |||||||| || |||||||||||||||||| |||||    
T  42735282 aggggcattatgggaaataggaatatggaccctcttataaatatgagaaaaggcaaggaaataagcatgaaaaatatgtgatgaaactcttattctc 42735378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 5099 - 5017
Alignment:
Q  168 aggggcaatatgggaaatagaaata-ggacccttata--aataagagaaaagccaaggaagtaagcatggaagatatgtgatg 247  Q
    ||||||| |||||||||||| |||| |||||||||||  |||| |||||||||||||||| |||||||| || || |||||||    
T  5099 aggggcattatgggaaataggaatatggacccttatataaatatgagaaaagccaaggaaataagcatgaaatatgtgtgatg 5017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 39948169 - 39948228
Alignment:
Q  19 atcataaaagcattaaagtaaatcagaagctcacaactacatacggaagaactgagagaa 78  Q
    |||||| || ||| || ||||||||||||||||||||||||||| ||| || ||||||||    
T  39948169 atcatacaatcatgaatgtaaatcagaagctcacaactacataccgaataattgagagaa 39948228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University