View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8771_low_2 (Length: 476)
Name: NF8771_low_2
Description: NF8771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8771_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 16 - 458
Target Start/End: Original strand, 40115946 - 40116388
Alignment:
| Q |
16 |
cagtaagtactggagcagattcatcatcacgttgcagaacattttcatagtccacaagtagatcatgaagctcagcaaaggctatgggattctcacgcgt |
115 |
Q |
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| T |
40115946 |
cagtaagtactggagcagattcatcttcacgttgcagaacattttcatagtccataagtagatcatgaagctcaacaaaggctatgggattctcacgcgt |
40116045 |
T |
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| Q |
116 |
acgaagggcagcagaaacttctttgtactcagatccaagcccattcagagcatgaataaccaagtcatcatcatcaacaggtttgttaatgacagcaagc |
215 |
Q |
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| T |
40116046 |
acgaagggcagcagaaacttctttgtactcagatccaagcccattgagagcatgaataaccaagtcatcatcatcaacaggtttgttgatgacagcaagc |
40116145 |
T |
|
| Q |
216 |
tcatcagagattgatttaataccttgtaggtattcagaaactgatttggagccctttgttgtacaagacaggcgctccttaagatgcataatgcgtgatc |
315 |
Q |
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| T |
40116146 |
tcatcagagattgatttaataccttgtaggtattcagaaactgatttggagccctttgttgtacgagacaggcgctccttaagatgcataatgcgtgatc |
40116245 |
T |
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| Q |
316 |
tagtcttgctagcaaacattttcttgagggtatcccaagcttgttgagatgttttcacattgccaagagcagttatgatgctctaatcgacagatgtgat |
415 |
Q |
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| T |
40116246 |
tagtcttgctagcaaacattttcttgagggtatcccaagcttgttgagatgttttcacattgccaagagcagttatgatgctctgatcgacagatgtgat |
40116345 |
T |
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| Q |
416 |
gatagcgtgcaagatcaattgatcttgtcttgtccagtaatta |
458 |
Q |
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| T |
40116346 |
gatagcgtgcaagatcaattgatcttgtcttgtccagtaatta |
40116388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 77 - 352
Target Start/End: Complemental strand, 3016628 - 3016353
Alignment:
| Q |
77 |
atcatgaagctcagcaaaggctatgggattctcacgcgtacgaagggcagcagaaacttctttgtactcagatccaagcccattcagagcatgaataacc |
176 |
Q |
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||||||||| ||| |||| || |||| |||||| || || | |||||| |||| | |||||| |||| || ||||| ||||| |||||||||| || |
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| T |
3016628 |
atcatgaagttcatcaaatgcgatggcattctcccgagttctaagggctgcagcgatctctttgaactcggacccaaggccattgggagcatgaatcacg |
3016529 |
T |
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| Q |
177 |
aagtcatcatcatcaacaggtttgttaatgacagcaagctcatcagagattgatttaataccttgtaggtattcagaaactgatttggagccctttgttg |
276 |
Q |
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| T |
3016528 |
agatcatcatcatcaataggcttgttgatgattgcaagttcatcagaaattgctttgatggcttggaggtattcagagacggatttggaacctttagagg |
3016429 |
T |
|
| Q |
277 |
tacaagacaggcgctccttaagatgcataatgcgtgatctagtcttgctagcaaacattttcttgagggtatccca |
352 |
Q |
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| T |
3016428 |
ttcgagttaaccgctctttaagatgcataatgcgagctcttgttttgcttgcaaacattttgttaaggatatccca |
3016353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 454
Target Start/End: Original strand, 9039282 - 9039409
Alignment:
| Q |
327 |
gcaaacattttcttgagggtatcccaagcttgttgagatgttttcacattgccaagagcagttatgatgctctaatcgacagatgtgatgatagcgtgca |
426 |
Q |
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|||||||| |||||||| ||||||||||||||||| || | ||| |||||||| | | || |||||||| | ||||||||||||||| ||||| || | |
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| T |
9039282 |
gcaaacatcttcttgagagtatcccaagcttgttgggaggatttgacattgcctaatgtcgtgatgatgctatgatcgacagatgtgataatagcatgta |
9039381 |
T |
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| Q |
427 |
agatcaattgatcttgtcttgtccagta |
454 |
Q |
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|| | ||| || |||||||||||||| |
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| T |
9039382 |
gtatgagttggtcctgtcttgtccagta |
9039409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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