View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8771_low_20 (Length: 244)
Name: NF8771_low_20
Description: NF8771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8771_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 33631931 - 33632132
Alignment:
| Q |
19 |
ttaaaagactctctgatgaagaagtggccaatctggcagaagactatagagcttgcaaaatccaacaatgtctggccacggtcctcaagccaatgaagta |
118 |
Q |
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| T |
33631931 |
ttaaaagactctctgatgaagaagtggccaatctggcagaagactatagagcttgcaaaatccaacaatgtctggcaacagtcctcaagccaatgaagta |
33632030 |
T |
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| Q |
119 |
caaaacgaggcatagtagagggggtgtgcaaacagtaacaaaccataataaggagcaagggatatatcgatttgtgaaggctgcaagattttaagcttat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33632031 |
caaaacgaggcatagtagagggggtgtgcaaacagtaacaaaccataacaaggagcaagggatatatcgatttgtgaaggctgcaagattttaagcttat |
33632130 |
T |
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| Q |
219 |
cg |
220 |
Q |
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|| |
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| T |
33632131 |
cg |
33632132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 50948653 - 50948792
Alignment:
| Q |
19 |
ttaaaagactctctgatgaagaagtggccaatctggcagaagactatagagcttgcaaaatccaacaatgtctggccacggtcctcaagccaatgaagta |
118 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
50948653 |
ttaaaagactctctgatgaagaggtggccaatctggcagaagactatagagcttgcaaaatccaacaatgtctggcaacagtcctcaagccaatgaagta |
50948752 |
T |
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| Q |
119 |
caaaacgaggcatagtagagggggtgtgcaaacagtaaca |
158 |
Q |
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| T |
50948753 |
caaaatgaagcatagcagatggggcgtgcaaacagtaaca |
50948792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 50957883 - 50958034
Alignment:
| Q |
19 |
ttaaaagactctctgatgaagaagtggccaatctggcagaagactatagagcttgcaaaatccaacaatgtctggccacggtcctcaagccaatgaagta |
118 |
Q |
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|||||||||| ||||||| |||||||||||| ||||| ||||||| |||||||||| ||||||||||||||| || || |||||||| ||||||||| | |
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| T |
50957883 |
ttaaaagactatctgatgcagaagtggccaagctggccaaagactacagagcttgcagaatccaacaatgtctagcaacagtcctcaaaccaatgaagaa |
50957982 |
T |
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| Q |
119 |
caaaacgaggcatagtagagggggtgtgcaaacagtaacaaaccataataag |
170 |
Q |
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|||| ||||||||| ||||| ||| ||||||||||||||||||| |||||| |
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| T |
50957983 |
caaatcgaggcataacagaggcggtatgcaaacagtaacaaaccaaaataag |
50958034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 15856136 - 15856279
Alignment:
| Q |
19 |
ttaaaagactctctgatgaagaagtggccaatctggcagaagactatagagcttgcaaaatccaacaatgtctggccacggtcctcaagccaatgaagta |
118 |
Q |
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||||||||||| |||||| ||||||||| | ||||| |||||||| ||||| || ||||||||||||| | || || |||||||||||| ||||| | |
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| T |
15856136 |
ttaaaagactcactgatgtagaagtggcacagctggccagagactataaagcttccataatccaacaatgtgtagcaacagtcctcaagccagtgaagaa |
15856235 |
T |
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| Q |
119 |
caaaacgaggcatagtagagggggtgtgcaaacagtaacaaacc |
162 |
Q |
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||||| |||||||| ||| ||||||| |||||||||||||||| |
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| T |
15856236 |
caaaatgaggcataaaagaaggggtgtacaaacagtaacaaacc |
15856279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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