View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8771_low_4 (Length: 392)
Name: NF8771_low_4
Description: NF8771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8771_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 15 - 378
Target Start/End: Original strand, 37798192 - 37798552
Alignment:
| Q |
15 |
aacctgtgggataccgtggtggaagcaccggagtgccaatgactttggtttcggtgaattccaaaaccnnnnnnnnnnnnntcccttatgtttgacaagg |
114 |
Q |
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| T |
37798192 |
aacctgtgggataccatggtggacgcaccggagtgccaatgactttggtttcagtgaattccaaaaccaagaaaaaaat--tcccttat-tttgacaagg |
37798288 |
T |
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| Q |
115 |
aatgtacttatcacatgcaatttggatttaaatgagaatttgaaatttttgcagtattttttctttgcacattaactattacgtagacaaacttattatt |
214 |
Q |
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| T |
37798289 |
aatgtacttatcacatgcaatttggatttaaatgagaatttgaaatttttgcagtattttttctttgcacattaactattacgtagacaaacttattatt |
37798388 |
T |
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| Q |
215 |
acaatataacatgtttaagcacttgcataaaagcttgagaggcccaggtaacttactagcttattcaaagcctttctaattaattgaatatgtaagcttt |
314 |
Q |
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| T |
37798389 |
acaatataacatgtttaagcacttgcataaaaacttgagaggcccaggtaacttactagcttattcaaagcctttctaattaattgaatatgtaagcttt |
37798488 |
T |
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| Q |
315 |
ctaaggtagtgttatataatgaaaacattctgatgctagttttctaatgaaaacgttcatagtg |
378 |
Q |
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| T |
37798489 |
ctaaggtagtgttatataatgaaaacattctgatgctagttttctaatgaaaacgttcatagtg |
37798552 |
T |
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