View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8771_low_7 (Length: 375)
Name: NF8771_low_7
Description: NF8771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8771_low_7 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 375
Target Start/End: Complemental strand, 27780630 - 27780273
Alignment:
| Q |
18 |
ataacttcatgtattttcttcactacaaattttaataattaagacaaagcaaaacgacccatgttcataatctaatctcctagaatttcacatataaaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27780630 |
ataacttcatgtattttcttcactacaaattttaataattaagacaaagcaaaacgacccatgttcataatctaatctcctagaatttcacatataaaaa |
27780531 |
T |
|
| Q |
118 |
acaaatcgaacttttcatttcaagtgtagccttgcttgtatttgcgaaatagctcctcagttttggcattcctaaaagcaaaacacccaaacaaataaac |
217 |
Q |
| |
|
||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27780530 |
acaaatccaacttataatttcaagtgtagccttgcttgtatttgcgaaatagctcctcagttttggcattcctaaaagcaaaacacccaaacaaataaac |
27780431 |
T |
|
| Q |
218 |
aagaattaaaccaatcaatgtaaccattaatatcacattggctttcctccattctatcctaatagttgctaacaaaccagctttgcatgagtcacaattg |
317 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27780430 |
aagaattaaaccaatcaatgtaactattaatatcacattggctttcctccattctatcctaatagttgctaacaaaccagctttgcatgagtcacaatta |
27780331 |
T |
|
| Q |
318 |
tagcaaagttgtgtttgttcattgctccatttcatgcaatccatgtcttcatttgtgt |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27780330 |
tagcaaagttgtgtttgttcattgctccatttcatgcaatccatgtcttcatttgtgt |
27780273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 137 - 348
Target Start/End: Complemental strand, 12641069 - 12640858
Alignment:
| Q |
137 |
tcaagtgtagccttgcttgtatttgcgaaatagctcctcagttttggcattcctaaaagcaaaacacccaaacaaataaacaagaattaaaccaatcaat |
236 |
Q |
| |
|
||||||||||||||| ||||| || ||||| || ||||||||||||||||||||||||||||| || |||| ||||||||| | ||||||| | | | |
|
|
| T |
12641069 |
tcaagtgtagccttgtttgtacttacgaaagagatcctcagttttggcattcctaaaagcaaagcatccaatcaaataaaccacaattaaaacgacaaca |
12640970 |
T |
|
| Q |
237 |
gtaaccattaatatcacattggctttcctccattctatcctaatagttgctaacaaaccagctttgcatgagtcacaattgtagcaaagttgtgtttgtt |
336 |
Q |
| |
|
|| | || ||||||||||| ||| | ||||||| |||||| | |||| ||||||||||| |||||||||||||| ||||| |||||| |||||| | |
|
|
| T |
12640969 |
gtgatgatcaatatcacattagctcttttccattccttcctaagatttgccaacaaaccagccttgcatgagtcacagttgtaacaaagtgttgtttggt |
12640870 |
T |
|
| Q |
337 |
cattgctccatt |
348 |
Q |
| |
|
| |||||||||| |
|
|
| T |
12640869 |
cgttgctccatt |
12640858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University