View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8772_1 (Length: 366)
Name: NF8772_1
Description: NF8772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8772_1 |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 221 - 353
Target Start/End: Original strand, 30620944 - 30621076
Alignment:
| Q |
221 |
tacttacattatgaatccattgtctatagatgtagatgaaaccaacactatatagttcattttcaattttccattcaaattgggaattgttttgattgaa |
320 |
Q |
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| T |
30620944 |
tacttacattatgaatccattgtctatagatgtagatgaaaccaacactatatagttcattttcaattttccattcaacttgggaattgttttgattgaa |
30621043 |
T |
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| Q |
321 |
aattaaggaatgacgacaaatccacacaggttc |
353 |
Q |
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| T |
30621044 |
aattaaggaatgacgacaaatccacaaaggttc |
30621076 |
T |
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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 51931066 - 51931111
Alignment:
| Q |
148 |
ttgtacacacaaactcaaagagctcttgacatcttaagggtgtttg |
193 |
Q |
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| T |
51931066 |
ttgtacacataaactcaaaggggtcttgacatcttaagggagtttg |
51931111 |
T |
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