View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8772_low_1 (Length: 374)
Name: NF8772_low_1
Description: NF8772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8772_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 11 - 358
Target Start/End: Original strand, 31294993 - 31295340
Alignment:
| Q |
11 |
atgaagccattgattggattcaaaaggttcaagcacatttcggttttggtcctctttgtgtttatctatccattaattacatggatcgtttcctttcggc |
110 |
Q |
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| T |
31294993 |
atgaagccattgattggattcaaaaggttcaatcacatttcggttttggtccgctttgtgtttatctatccattaattacatggatcgtttcctctctgc |
31295092 |
T |
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| Q |
111 |
atatcagttcccagagagaagagattggtcaatgcaattgttggctgttgcttgcttatctttggcagccaaagtagacgaaaccgatgttcctcggatt |
210 |
Q |
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| T |
31295093 |
atatcaattcccagagagaagagattggtcaatgcaattgttggctgttgcttgcttatctttggcagccaaagtagacgaaaccgatgttcctcggatt |
31295192 |
T |
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| Q |
211 |
cttgaattgcagattggtgaatccaagtttgtgtttgaagtaaaaaccattcagaaaatagagcttctagtactaagcaccttgaagtggagaatgcagg |
310 |
Q |
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| T |
31295193 |
cttgaattgcagattggtgaatccaagtttgtgtttgaagcaaaaaccattcagaaaatagagcttctggtactaaccacattgaagtggagaatgcaag |
31295292 |
T |
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| Q |
311 |
caattactcctttctccttcattgaatatttcctttctaagattaatg |
358 |
Q |
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| T |
31295293 |
caattactcctttctccttcattgaatatttcctttctaagattaatg |
31295340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 197 - 289
Target Start/End: Original strand, 31301144 - 31301236
Alignment:
| Q |
197 |
atgttcctcggattcttgaattgcagattggtgaatccaagtttgtgtttgaagtaaaaaccattcagaaaatagagcttctagtactaagca |
289 |
Q |
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| T |
31301144 |
atgttcctccgaattttgatttgcagattagtgaatccaagtttgtgtttgaaggtaaaaccattcagaaaatggagcttctagtactgagca |
31301236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 281 - 351
Target Start/End: Original strand, 31301998 - 31302067
Alignment:
| Q |
281 |
tactaagcaccttgaagtggagaatgcaggcaattactcctttctccttcattgaatatttcctttctaag |
351 |
Q |
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| T |
31301998 |
tactgagcacattgaagtggagaatgcaagcaattactcctttctccttcattgaat-tttcctttctaag |
31302067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 218 - 356
Target Start/End: Complemental strand, 46341967 - 46341829
Alignment:
| Q |
218 |
tgcagattggtgaatccaagtttgtgtttgaagtaaaaaccattcagaaaatagagcttctagtactaagcaccttgaagtggagaatgcaggcaattac |
317 |
Q |
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| T |
46341967 |
tgcagattggtgaatccaagtttgtatttgaagctaaaaccatacagagaatggagcttctagtactcagcacattgaagtggagaatgcaagcaattac |
46341868 |
T |
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| Q |
318 |
tcctttctccttcattgaatatttcctttctaagattaa |
356 |
Q |
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| T |
46341867 |
tccattctccttcattgaatgtttcctttctaagattaa |
46341829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 46342350 - 46342278
Alignment:
| Q |
35 |
aggttcaagcacatttcggttttggtcctctttgtgtttatctatccattaattacatggatcgtttcctttc |
107 |
Q |
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| T |
46342350 |
aggttcgagcacatttcggttttggtcctctttgtgcttatctatccattaattacatggatcgtttcctttc |
46342278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 128 - 222
Target Start/End: Complemental strand, 46342165 - 46342071
Alignment:
| Q |
128 |
gaagagattggtcaatgcaattgttggctgttgcttgcttatctttggcagccaaagtagacgaaaccgatgttcctcggattcttgaattgcag |
222 |
Q |
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| T |
46342165 |
gaagagcttggacaatgcaattgttggctgtagcttgcttatctttggcagctaaagtagaggaaactgctgttcctcagcctcttgatttgcag |
46342071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 345
Target Start/End: Complemental strand, 27699772 - 27699697
Alignment:
| Q |
270 |
agagcttctagtactaagcaccttgaagtggagaatgcaggcaattactcctttctccttcattgaatatttcctt |
345 |
Q |
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| T |
27699772 |
agagcttctgatactaagcacattgaactggagaatgcaagcaattacacctttctcctacattgactttttcctt |
27699697 |
T |
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